Releases: cancervariants/gene-normalization
Releases · cancervariants/gene-normalization
0.1.40-dev1
What's Changed
- fix: catch ETL module import errors by @jsstevenson in #249
- docs: fix documentation link by @Rajdeep1311 in #257
- fix: correct gene info file glob typo by @jsstevenson in #266
- feat: update HGNC license by @jsstevenson in #267
- cicd: add gh action for closing issue on staging branch by @korikuzma in #275
- test: add basic route tests by @jsstevenson in #278
- build: modernize build configs by @jsstevenson in #279
- build: update ga4gh.vrsatile.pydantic version by @korikuzma in #281
- cicd: update release.yaml (publish python distribution to pypi) by @korikuzma in #283
New Contributors
- @Rajdeep1311 made their first contribution in #257
Full Changelog: 0.1.40-dev0...0.1.40-dev1
0.3.0-dev0
What's Changed
- feat: add get_all_records DB method by @jsstevenson in #231
- build!: use vrs-python for VRS 2.0-alpha models by @korikuzma in #239
- refactor!: Remove ChromosomeLocation + SequenceLocation classes by @korikuzma in #245
Full Changelog: 0.2.10...0.3.0-dev0
0.1.40-dev0
What's Changed
- cicd: add Ruff and Black by @jsstevenson in #232
- refactor: use isinstance instead of type() check by @jsstevenson in #243
- feat!: store source metadata in concepts table by @jsstevenson in #233
- feat!: remove search result formatting options by @jsstevenson in #244
- feat!: update data acquisition methods by @jsstevenson in #236
- docs: incorporate Alex feedback by @jsstevenson in #242
Full Changelog: 0.1.39...0.1.40-dev0
0.2.10
What's Changed
- docs: make separate sphinx docs by @jsstevenson in #190
- feat: add DB status check entrypoint by @jsstevenson in #196
- fix: remove duplicate xrefs from merged records by @jsstevenson in #197
- fix: prevent redundant/incorrect AWS confirmation checks by @jsstevenson in #198
- docs: touch up query API documentation by @jsstevenson in #199
- perf: improve PG normalized concept deletion by @jsstevenson in #201
- build: separate dependency groups by use case by @jsstevenson in #203
- fix!: use more precise name for CLI source option by @jsstevenson in #205
- docs: provide readthedocs integration by @jsstevenson in #208
- docs: expand base template and improve descriptions by @jsstevenson in #211
- docs: add more usage details by @jsstevenson in #213
- feat: optionally define dynamo table names via environment variable by @jsstevenson in #214
- test: update test data by @jsstevenson in #223
- ci: use latest pip in sphinx test (metaschema) by @jsstevenson in #221
- doc: preserve arg defaults in docs by @jsstevenson in #225
- chore: add PyPI metadata (metaschema) by @jsstevenson in #229
- feat: provide strand in normalized record (metaschema) by @jsstevenson in #228
Full Changelog: 0.2.9...0.2.10
0.1.39
What's Changed
- feat: add get_all_records DB method by @jsstevenson in #230
Full Changelog: 0.1.38...0.1.39
0.1.38
What's Changed
- ci: use latest pip in sphinx test by @jsstevenson in #219
- fix: preserve arg defaults in docs by @jsstevenson in #218
- test: update test data by @jsstevenson in #222
- feat: provide strand in normalized record by @jsstevenson in #226
- chore: add PyPI metadata by @jsstevenson in #224
Full Changelog: 0.1.37...0.1.38
0.1.37
What's Changed
- fix!: use more precise name for CLI source option by @jsstevenson in #204
- docs: provide readthedocs integration by @jsstevenson in #207
- docs: expand base template and improve descriptions by @jsstevenson in #209
- docs: add more usage details by @jsstevenson in #210
- feat: optionally define dynamo table names via environment variable by @jsstevenson in #212
Full Changelog: 0.1.36...0.1.37
0.1.36
What's Changed
- feat: add DB status check entrypoint by @jsstevenson in #191
- fix: prevent redundant/incorrect AWS confirmation checks by @jsstevenson in #193
- fix: remove duplicate xrefs from merged records by @jsstevenson in #194
- docs: touch up query API documentation by @jsstevenson in #192
- perf: improve PG normalized concept deletion by @jsstevenson in #195
- build: separate dependency groups by use case by @jsstevenson in #202
Full Changelog: 0.1.35...0.1.36
0.1.35
What's Changed
VRS 1.3 introduced in this release
- build: update ga4gh packages to use VRS 1.3 models by @korikuzma in #189
Full Changelog: 0.1.34...0.1.35
0.2.9
What's Changed
- test: incorporate latest source updates to test cases by @jsstevenson in #173
- refactor: rename SEQREPO_DATA_PATH --> SEQREPO_ROOT_DIR (staging) by @korikuzma in #187
- feat: support PostgreSQL as optional storage backend by @jsstevenson in #183
Full Changelog: v0.2.8...0.2.9