Code

enhancement!: CLI overhaul#299

Code

Merged

jsstevenson merged 27 commits intointerface-updates-epiccancervariants/gene-normalization:interface-updates-epicfrom cli-refactorcancervariants/gene-normalization:cli-refactorCopy head branch name to clipboardDec 13, 2023

+531-328

Commits

Commits on Nov 21, 2023

• enhancement!: break CLI update methods into reusable module

  jsstevenson

  committed
  9c2951f

  Copy full SHA for 9c2951f

• docs: some doc work -- more todo

  jsstevenson

  committed
  0458f68

  Copy full SHA for 0458f68

• update docs

  jsstevenson

  committed
  d2b1df7

  Copy full SHA for d2b1df7

• saving docs progress

  jsstevenson

  committed
  98def92

  Copy full SHA for 98def92

• overhaul CLI commands

  jsstevenson

  committed
  e4f48c6

  Copy full SHA for e4f48c6

• add docs deps

  jsstevenson

  committed
  85084fd

  Copy full SHA for 85084fd

• fix source name handling

  jsstevenson

  committed
  c1db899

  Copy full SHA for c1db899

Commits on Nov 25, 2023

• Merge branch 'interface-updates-epic' into cli-refactor

  jsstevenson

  committed
  eb396f4

  Copy full SHA for eb396f4

• fix normalized concept generation

  jsstevenson

  committed
  8e06031

  Copy full SHA for 8e06031

Commits on Nov 27, 2023

• .

  jsstevenson

  committed
  ce77a42

  Copy full SHA for ce77a42

Commits on Dec 6, 2023

• change option names

  jsstevenson

  committed
  aafd95e

  Copy full SHA for aafd95e

• reformat

  jsstevenson

  committed
  958a53d

  Copy full SHA for 958a53d

Commits on Dec 12, 2023

• minor changes

  jsstevenson

  committed
  1abfdde

  Copy full SHA for 1abfdde

Commits on Dec 13, 2023

• Merge branch 'interface-updates-epic' into cli-refactor

  jsstevenson

  committed
  71c51da

  Copy full SHA for 71c51da

• Add options formatting

  jsstevenson

  committed
  da60e4b

  Copy full SHA for da60e4b

• format command

  jsstevenson

  committed
  d531250

  Copy full SHA for d531250

• custom usage formatting

  jsstevenson

  committed
  9985849

  Copy full SHA for 9985849

• fix option

  jsstevenson

  committed
  1eb1a36

  Copy full SHA for 1eb1a36

• update descr

  jsstevenson

  committed
  b7d9edf

  Copy full SHA for b7d9edf

• forgot what this change even was

  jsstevenson

  committed
  9a7a6c4

  Copy full SHA for 9a7a6c4

• fiddling

  jsstevenson

  committed
  91f59b6

  Copy full SHA for 91f59b6

• add silent mode

  jsstevenson

  committed
  13d5e72

  Copy full SHA for 13d5e72

• .

  jsstevenson

  committed
  41274d7

  Copy full SHA for 41274d7

• fix bug

  jsstevenson

  committed
  ff724cc

  Copy full SHA for ff724cc

• autoformat

  jsstevenson

  committed
  356fdba

  Copy full SHA for 356fdba

• feedback

  jsstevenson

  committed
  843cadd

  Copy full SHA for 843cadd

• Update src/gene/cli.py

  Show description for 692ab46
  

  jsstevenson

  and

  korikuzma

  authored
  692ab46

  Copy full SHA for 692ab46