Skip to content

camivolij/decart_rule_based_nlp

BranchesTags
 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

156 Commits
KB
KB
 
 
data
data
 
 
images
images
 
 
infrastructure
infrastructure
 
 
pyConTextNLP
pyConTextNLP
 
 
tmp
tmp
 
 
.gitignore
.gitignore
 
 
00_Pre-class_materials.ipynb
00_Pre-class_materials.ipynb
 
 
01_NLP_Annotations.ipynb
01_NLP_Annotations.ipynb
 
 
02_MIMICII_Intro_and_Cohorts.ipynb
02_MIMICII_Intro_and_Cohorts.ipynb
 
 
04_NLP_Evaluation_Metrics.ipynb
04_NLP_Evaluation_Metrics.ipynb
 
 
05_NLP_Validation.ipynb
05_NLP_Validation.ipynb
 
 
06_Keyword_Searching_and_ErrorAnalysis.ipynb
06_Keyword_Searching_and_ErrorAnalysis.ipynb
 
 
06_NLP_ErrorAnalysis1.ipynb
06_NLP_ErrorAnalysis1.ipynb
 
 
07a_You_Be_The_NLP_Algorithm.ipynb
07a_You_Be_The_NLP_Algorithm.ipynb
 
 
07b_NLP_ConText_Algorithm.ipynb
07b_NLP_ConText_Algorithm.ipynb
 
 
08_NLP_Regex_for_Concept_Extraction.ipynb
08_NLP_Regex_for_Concept_Extraction.ipynb
 
 
09_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb
09_NLP_pneumonia_pyConText_targets_and_modifiers.ipynb
 
 
10_NLP_DocumentClassification.ipynb
10_NLP_DocumentClassification.ipynb
 
 
11_NLP_ErrorAnalysis2.ipynb
11_NLP_ErrorAnalysis2.ipynb
 
 
12_NLP_Project_Template.ipynb
12_NLP_Project_Template.ipynb
 
 
21_Introduction_to_Annotation.ipynb
21_Introduction_to_Annotation.ipynb
 
 
24_brat_workspace_setup.ipynb
24_brat_workspace_setup.ipynb
 
 
25_Annotation Process.ipynb
25_Annotation Process.ipynb
 
 
27_Calculate_Agreement_for_Brat_Annotations.ipynb
27_Calculate_Agreement_for_Brat_Annotations.ipynb
 
 
28_Additional_Tools.ipynb
28_Additional_Tools.ipynb
 
 
Appendix_text_processing_txtblob.ipynb
Appendix_text_processing_txtblob.ipynb
 
 
Chapman_NLP_Difficult_Short.pdf
Chapman_NLP_Difficult_Short.pdf
 
 
Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf
Chapman_NLP_Tutorial-Report-Answers-notebooks.pdf
 
 
Day4_scispacy_demo.ipynb
Day4_scispacy_demo.ipynb
 
 
Day4_spacy_modular_pipelines.ipynb
Day4_spacy_modular_pipelines.ipynb
 
 
Day4_spacy_pneumonia_concept_rules.ipynb
Day4_spacy_pneumonia_concept_rules.ipynb
 
 
Day4_spacy_visualization.ipynb
Day4_spacy_visualization.ipynb
 
 
DocumentClassifier.py
DocumentClassifier.py
 
 
NLP_Process.pptx
NLP_Process.pptx
 
 
NegEx-ConText-Short.pdf
NegEx-ConText-Short.pdf
 
 
Post-class Survey
Post-class Survey
 
 
README.md
README.md
 
 
Syllabus.ipynb
Syllabus.ipynb
 
 
chapman_jbi_2007_annotation_schema.pdf
chapman_jbi_2007_annotation_schema.pdf
 
 
compare_utils.py
compare_utils.py
 
 
itemData.py
itemData.py
 
 
nlp_pneumonia_utils.py
nlp_pneumonia_utils.py
 
 
pycontext_quiz.py
pycontext_quiz.py
 
 
quiz_utils.py
quiz_utils.py
 
 
regular_expression_quiz.py
regular_expression_quiz.py
 
 
visual.py
visual.py
 
 

Repository files navigation

DeCart_2019_rulebased_NLP

Repository for the 2019 DeCART (DATA SCIENCE FOR THE HEALTH SCIENCES) University of Utah class in rule-based NLP

This class took place from July 15 to July 18, 2019 at the HSEB 5100C, University of Utah.

More info on the course can be found here:

https://datascience4health.bmi.utah.edu/develop-nlp/

Presenters : Dr.Wendy Chapman, Kelly Peterson, Alec Chapman, Jianlin Shi

Topics:

About

No description, website, or topics provided.

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

2 tags

Packages

No packages published

Languages

  • Jupyter Notebook 54.0%
  • JavaScript 28.0%
  • Python 12.7%
  • CSS 5.3%