Problems with MicrobiomeStat.rdb

[kuzmpa]

Dear Chen Yang,
Thank You for creating the MicrobiomeStat tools. I would really like to process my data using your package and generate_beta_change_test_long() , but I am facing a problem Warning: restarting interrupted promise evaluationWarning: internal error -3 in R_decompress1Error in FUN(X[[i]], ...) :
The lazy-load database '/R/x86_64-pc-linux-gnu-library/4.2/MicrobiomeStat/R/MicrobiomeStat.rdb' is corrupted.
My code looks like:

Downloaded using devtools::install_github("cafferychen777/MicrobiomeStat")
Many thanks in advance,
Polina

[kuzmpa]

Download report:

devtools::install_github("cafferychen777/MicrobiomeStat")
Downloading GitHub repo cafferychen777/MicrobiomeStat@HEAD
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/tmp/Rtmpt0L5zh/remotes6e7524ae984a/cafferychen777-MicrobiomeStat-8fca3a3/DESCRIPTION’ (426ms)
─ preparing ‘MicrobiomeStat’:
✔ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories (827ms)
─ building ‘MicrobiomeStat_1.1.3.tar.gz’

Installing package into ‘/R/x86_64-pc-linux-gnu-library/4.2’
(as ‘lib’ is unspecified)

• installing source package ‘MicrobiomeStat’ ...
  ** using staged installation
  ** R
  ** data
  *** moving datasets to lazyload DB
  ** inst
  ** byte-compile and prepare package for lazy loading
  Note: wrong number of arguments to 'sqrt'
  ** help
  *** installing help indices
  *** copying figures
  ** building package indices
  ** testing if installed package can be loaded from temporary location
  ** testing if installed package can be loaded from final location
  ** testing if installed package keeps a record of temporary installation path
• DONE (MicrobiomeStat)

[cafferychen777]

Dear Polina,

Thank you for reaching out and for your interest in using MicrobiomeStat. I apologize for the inconvenience you're experiencing.

The error message you're seeing suggests that there might be an issue with the lazy-load database of the MicrobiomeStat package. This can sometimes happen if the R session is interrupted or if there's a problem with the package installation.

Here are a few steps you can try to resolve this issue:

1. Restart your R session: This can often resolve issues related to the lazy-load database. You can do this by restarting R or your R environment (e.g., RStudio).

2. Reinstall the package: If restarting the R session doesn't work, try reinstalling the MicrobiomeStat package. You can do this using the following command:

   devtools::install_github("cafferychen777/MicrobiomeStat")

If these steps do not resolve the issue, please let me know, and we can explore further troubleshooting options.

Best regards,
Chen Yang

[kuzmpa]

Dear Chen Yang,
Thanks for the quick response! That really helped.

[cafferychen777]

Dear Polina,

I'm glad to hear that the issue has been resolved. If you have any further questions or encounter any other problems while using the MicrobiomeStat package, please feel free to reach out.

Best regards,
Chen YANG