Fetch missing patient clinical data for the density plot #4668

	name: sonarcloud
	on:
	push:
	branches:
	- master
	pull_request:
	types: [opened, synchronize, reopened]
	jobs:
	build:
	name: sonarcloud
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	with:
	fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis
	- name: Set up JDK 21
	uses: actions/setup-java@v1
	with:
	java-version: 21
	- name: Cache SonarCloud packages
	uses: actions/cache@v1
	with:
	path: ~/.sonar/cache
	key: ${{ runner.os }}-sonar
	restore-keys: ${{ runner.os }}-sonar
	- name: Cache Maven packages
	uses: actions/cache@v1
	with:
	path: ~/.m2
	key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
	restore-keys: ${{ runner.os }}-m2
	- name: 'Create application.properties'
	run: \|
	cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties
	- name: Build and analyze
	env:
	SONAR_TOKEN: de1b5cc660cd210dde840f492c371da6cc801763
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: mvn clean install verify org.sonarsource.scanner.maven:sonar-maven-plugin:sonar
	- name: 'Add host.testcontainers.internal to /etc/hosts'
	run: \|
	echo "127.0.0.1 host.testcontainers.internal" \| sudo tee -a /etc/hosts
	- name: 'Run integration tests'
	run: \|
	mvn verify -Pintegration-test
	- name: Code Coverage
	env:
	SONAR_TOKEN: de1b5cc660cd210dde840f492c371da6cc801763
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: mvn sonar:sonar -Pcoverage

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