chore(one-offs): minor tweaks to liftover [no ci]

c3g · Jan 17, 2024 · 62e0b3e · 62e0b3e
1 parent ca3ea47
commit 62e0b3e
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diff --git a/one-offs/hpc/peaks_liftover.bash b/one-offs/hpc/peaks_liftover.bash
@@ -2,7 +2,7 @@
 #SBATCH --mem=8G
 #SBATCH --ntasks=1
 #SBATCH --cpus-per-task=1
-#SBATCH --time=24:00:00
+#SBATCH --time=1:00:00
 #SBATCH --account=rrg-bourqueg-ad
 
 module load nixpkgs/16.09 gcc/7.3.0

diff --git a/one-offs/hpc/peaks_liftover.py b/one-offs/hpc/peaks_liftover.py
@@ -135,7 +135,7 @@ def main():
             delimiter=",",
             quotechar='"')
         writer.writeheader()
-        for row in tqdm.tqdm(lift_over_qtl_rows(qtl_rows, snps_to_lift_over, lifted_over_peaks), desc="qtl writer"):
+        for row in lift_over_qtl_rows(qtl_rows, snps_to_lift_over, lifted_over_peaks):
             writer.writerow(row)