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@c2-d2

Center for Communicable Disease Dynamics – Harvard University

Center for Communicable Disease Dynamics at the Harvard T.H. Chan School of Public Health

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  1. pr_mort_official pr_mort_official Public

    Data and pipeline for Mortality in Puerto Rico after Hurricane Maria

    HTML 36 20

  2. disty disty Public

    Disty McMatrixface - compute a distance matrix from a core genome alignment file

    C++ 14 1

  3. CoV-seasonality CoV-seasonality Public

    Code for regression model from Kissler, Tedijanto et al. 2020.

    R 8 6

  4. cov19flightimport cov19flightimport Public

    Data and code for De Salazar et al. 2020

    R 7 2

  5. rase-pipeline rase-pipeline Public

    RASE pipeline for inferring antibiotic resistance and susceptibility using genomic neighbor typing.

    Python 6 1

  6. within-host-diversity within-host-diversity Public

    Python 5

Repositories

Showing 10 of 31 repositories
  • Focusing-a-Viral-Risk-Ranking-Tool-on-Prediction-2025 Public
    c2-d2/Focusing-a-Viral-Risk-Ranking-Tool-on-Prediction-2025’s past year of commit activity
    R 0 0 0 0 Updated Feb 3, 2025
  • rase-pipeline Public

    RASE pipeline for inferring antibiotic resistance and susceptibility using genomic neighbor typing.

    c2-d2/rase-pipeline’s past year of commit activity
    Python 6 MIT 1 5 0 Updated Nov 26, 2024
  • Focusing-a-Viral-Risk-Ranking-Tool-on-Prediction Public
    c2-d2/Focusing-a-Viral-Risk-Ranking-Tool-on-Prediction’s past year of commit activity
    R 0 0 0 0 Updated Nov 18, 2024
  • Spillover-Evaluation Public
    c2-d2/Spillover-Evaluation’s past year of commit activity
    R 0 0 0 0 Updated Sep 7, 2024
  • LAC_testing Public
    c2-d2/LAC_testing’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jun 28, 2023
  • FungalPathogens Public
    c2-d2/FungalPathogens’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 22, 2023
  • cov19flightimport Public

    Data and code for De Salazar et al. 2020

    c2-d2/cov19flightimport’s past year of commit activity
    R 7 2 0 0 Updated Mar 15, 2023
  • CoV-seasonality Public

    Code for regression model from Kissler, Tedijanto et al. 2020.

    c2-d2/CoV-seasonality’s past year of commit activity
    R 8 6 0 0 Updated Mar 15, 2023
  • disty Public

    Disty McMatrixface - compute a distance matrix from a core genome alignment file

    c2-d2/disty’s past year of commit activity
    C++ 14 MIT 1 7 0 Updated Mar 15, 2023
  • pr_mort_official Public

    Data and pipeline for Mortality in Puerto Rico after Hurricane Maria

    c2-d2/pr_mort_official’s past year of commit activity
    HTML 36 MIT 20 1 0 Updated Mar 15, 2023
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