Update dependency pysam to v0.22.1 #9
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This PR contains the following updates:
==0.22.0->==0.22.1Release Notes
pysam-developers/pysam (pysam)
v0.22.1Compare Source
This bug fix release wraps htslib/samtools/bcftools 1.18.
Bugs fixed:
Preserve all header field tags defined in the SAM specification (notably
TP) inAlignmentHeader.from_dict()andAlignmentHeader.to_dict()(#1237, PR #1238, thanks to @tfenne and @nh13)Adjust HTSlib's Makefile so that
make distcleanno longer tries to rebuild the htscodecs configury (PR #1247, reported by @nsoranzo)Reinstate S3 support in pre-built Linux wheels: support for this protocol was inadvertently omitted from the pre-built 0.22.0 wheels on Linux (#1249, #1277, etc varying circumstances; likely it is this that was reported by @Mathew-B-SDGS, @BenjaminSargsyan, et al)
Add missing
AlignedSegment.is_mappedetc properties to type stubs (PR #1273, thanks to @msto)Fix off-by-one NamedTupleProxy,
asBed, etc array bounds check (#1279, reported by @dbolser)Make pysam's klib headers compatible with C++ (reported by @martin-g)
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