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MAINT: Testing Ifs in workflow to test multiple OS
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kmilo9999 committed Jun 21, 2024
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105 changes: 64 additions & 41 deletions .github/workflows/macos_unit_tests.yml
Original file line number Diff line number Diff line change
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name: Unit tests
name: Unit tests

on:
push:
branches: ['**']
pull_request:
branches: ['**']
on:
push:
branches: ['**']
pull_request:
branches: ['**']

jobs:
build:
jobs:
build:

runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [macos-latest]
python-version: [3.8, 3.9, "3.10"]
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest,macos-latest]
python-version: [3.8]

steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: test
python-version: ${{ matrix.python-version }}
fetch-depth: 2
- name: Install dependencies
shell: bash -el {0}
run: |
python -m pip install --upgrade pip
conda install --yes -c conda-forge mpi4py openmpi
- name: Install HNN-core
shell: bash -el {0}
run: |
pip install --verbose '.[opt, parallel, test, gui]'
- name: Lint with flake8
shell: bash -el {0}
run: |
flake8 --count hnn_core
- name: Test with pytest
shell: bash -el {0}
run: |
python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml
- name: Upload coverage to Codecov
shell: bash -el {0}
run: |
bash <(curl -s https://codecov.io/bash) -f ./coverage.xml
steps:
- uses: actions/checkout@4

- name: Install Ubuntu System dependencies
if: matrix.os == 'ubuntu-latest'
shell: bash -el {0}
run: |
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install libopenmpi-dev openmpi-bin
- name: Activate conda environment for macOS
if: matrix.os == 'macos-latest'
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: test
python-version: ${{ matrix.python-version }}
fetch-depth: 2

- name: Activate Python environment for Ubuntu
if: matrix.os == 'ubuntu-latest'
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}

- name: Install Python dependencies
shell: bash -el {0}
run: |
if [ ${{ matrix.os }} == 'macos-latest' ]; then
python -m pip install --upgrade pip
conda install --yes -c conda-forge mpi4py openmpi
elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then
python -m pip install --upgrade pip
python -m pip install mpi4py
fi
- name: Install HNN-core
shell: bash -el {0}
run: |
pip install --verbose '.[opt, parallel, test, gui]'
- name: Lint with flake8
shell: bash -el {0}
run: |
flake8 --count hnn_core
- name: Test with pytest
shell: bash -el {0}
run: |
python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml
- name: Upload coverage to Codecov
shell: bash -el {0}
run: |
bash <(curl -s https://codecov.io/bash) -f ./coverage.xml

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