small bug in LatencyPrior

brj1 · Feb 16, 2023 · e8f41ad · e8f41ad
1 parent 5f4012f
commit e8f41ad
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/dist/BBD.addon.zip b/dist/BBD.addon.zip
diff --git a/src/bbd/distributions/LatencyPrior.java b/src/bbd/distributions/LatencyPrior.java
@@ -88,16 +88,16 @@ public double calculateLogP() {
         int k = 0;
 
         final double tMRCA = tree.getRoot().getDate();
-        final double rate = reactivationRate - latencyRate;
-                
+        final double rate = reactivationRate - latencyRate;        
+
         for (final int i : taxonIndex) {
             double date = tree.getNode(i).getDate();
 
-            if (date > tMRCA && date < oriDate[i]) {
+            if (date > tMRCA && date < oriDate[k]) {
                 // likelihood of going latent at `date` given sampling date
                 logP += Math.exp(rate * date) *
                     rate / 
-                    (Math.exp(rate * oriDate[i]) -
+                    (Math.exp(rate * oriDate[k]) -
                         Math.exp(rate * tMRCA));
             } else {
                 // not in range