-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #6 from bridgedb/new_release
new config files
- Loading branch information
Showing
69 changed files
with
633 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=btaurus_gene_ensembl | ||
database_name=Bos taurus genes and proteins | ||
file_name=Bt_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT | ||
probe_datasource=Affy | ||
probe_set=affy_bovine | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=celegans_gene_ensembl | ||
database_name=Caenorhabditis elegans genes and proteins | ||
file_name=Ce_Derby_Ensembl_108 | ||
chromosome_name=I,II,III,IV,MtDNA,V,X | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304 | ||
gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=clfamiliaris_gene_ensembl | ||
database_name=Canis familiaris genes and proteins | ||
file_name=Cf_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X | ||
probe_datasource=Affy | ||
probe_set=affy_canine_2 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id | ||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=cintestinalis_gene_ensembl | ||
database_name=Ciona intestinalis genes and proteins | ||
file_name=Ci_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT | ||
probe_datasource=Affy | ||
probe_set=affy_cint06a520380f | ||
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=dmelanogaster_gene_ensembl | ||
database_name=Drosophila melanogaster genes and proteins | ||
file_name=Dm_Derby_Ensembl_108 | ||
chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y | ||
probe_datasource=Affy | ||
probe_set=affy_drosgenome1,affy_drosophila_2 | ||
gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=drerio_gene_ensembl | ||
database_name=Danio rerio genes and proteins | ||
file_name=Dr_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=ggallus_gene_ensembl | ||
database_name=Gallus gallus genes and proteins | ||
file_name=Gg_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=hsapiens_gene_ensembl | ||
database_name=Homo sapiens genes and proteins | ||
file_name=Hs_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT | ||
probe_datasource=Affy,Agilent,Illumina | ||
probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=mmulatta_gene_ensembl | ||
database_name=Macaca mulatta genes and proteins | ||
file_name=Ml_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=mmusculus_gene_ensembl | ||
database_name=Mus musculus genes and proteins | ||
file_name=Mm_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,X,Y,MT | ||
probe_datasource=Affy,Agilent,Illumina | ||
probe_set=affy_mg_u74a,affy_mg_u74av2,affy_mg_u74b,affy_mg_u74bv2,affy_mg_u74c,affy_mg_u74cv2,affy_moe430a,affy_moe430b,affy_moex_1_0_st_v1,affy_mogene_1_0_st_v1,affy_mogene_2_1_st_v1,affy_mouse430a_2,affy_mouse430_2,affy_mu11ksuba,affy_mu11ksubb,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,illumina_mouseref_8,illumina_mousewg_6_v1,illumina_mousewg_6_v2 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=oanatinus_gene_ensembl | ||
database_name=Ornithorhynchus anatinus genes and proteins | ||
file_name=Oa_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,MT,X1,X2,X3,X4,X5 | ||
probe_datasource=Affy | ||
probe_set=affy_platypus_exon | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=oaries_gene_ensembl | ||
database_name=Ovis aries genes and proteins | ||
file_name=Ova_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,MT,X | ||
probe_datasource= | ||
probe_set= | ||
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=ptroglodytes_gene_ensembl | ||
database_name=Pan troglodytes genes and proteins | ||
file_name=Pt_Derby_Ensembl_108 | ||
chromosome_name=1,2A,2B,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=ecaballus_gene_ensembl | ||
database_name=Equus caballus genes and proteins | ||
file_name=Qc_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,MT,X | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_equgene_1_0_st_v1,affy_equgene_1_1_st_v1,agilent_gpl10248,agilent_gpl13795,agilent_gpl15189,agilent_gpl15190,agilent_gpl15204,agilent_gpl15217,agilent_gpl17689,agilent_gpl20908,agilent_gpl23307 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=rnorvegicus_gene_ensembl | ||
database_name=Rattus norvegicus genes and proteins | ||
file_name=Rn_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,X,Y,MT | ||
probe_datasource=Affy,Agilent,Illumina | ||
probe_set=affy_rae230a,affy_rae230b,affy_raex_1_0_st_v1,affy_ragene_1_0_st_v1,affy_ragene_2_1_st_v1,affy_rat230_2,affy_rg_u34a,affy_rg_u34b,affy_rg_u34c,affy_rn_u34,affy_rt_u34,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v3,illumina_ratref_12_v1 | ||
gene_datasource=entrezgene_id,go_id,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,rgd_id,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=scerevisiae_gene_ensembl | ||
database_name=Saccharomyces cerevisiae genes and proteins | ||
file_name=Sc_Derby_Ensembl_108 | ||
chromosome_name=I,II,III,IV,IX,Mito,V,VI,VII,VIII,X,XI,XII,XIII,XIV,XV,XVI | ||
probe_datasource=Affy | ||
probe_set=affy_yeast_2,affy_yg_s98 | ||
gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,sgd_gene,uniprotswissprot |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=sscrofa_gene_ensembl | ||
database_name=Sus scrofa genes and proteins | ||
file_name=Ss_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,MT,X,Y | ||
probe_datasource=Affy | ||
probe_set=affy_porcine | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
endpoint=http://oct2022.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=xtropicalis_gene_ensembl | ||
database_name=Xenopus tropicalis genes and proteins | ||
file_name=Xt_Derby_Ensembl_108 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,MT | ||
probe_datasource=Affy | ||
probe_set=affy_x_tropicalis | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id | ||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=btaurus_gene_ensembl | ||
database_name=Bos taurus genes and proteins | ||
file_name=Bt_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT | ||
probe_datasource=Affy | ||
probe_set=affy_bovine | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=celegans_gene_ensembl | ||
database_name=Caenorhabditis elegans genes and proteins | ||
file_name=Ce_Derby_Ensembl_109 | ||
chromosome_name=I,II,III,IV,MtDNA,V,X | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304 | ||
gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=clfamiliaris_gene_ensembl | ||
database_name=Canis familiaris genes and proteins | ||
file_name=Cf_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X | ||
probe_datasource=Affy | ||
probe_set=affy_canine_2 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id | ||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=cintestinalis_gene_ensembl | ||
database_name=Ciona intestinalis genes and proteins | ||
file_name=Ci_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT | ||
probe_datasource=Affy | ||
probe_set=affy_cint06a520380f | ||
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=dmelanogaster_gene_ensembl | ||
database_name=Drosophila melanogaster genes and proteins | ||
file_name=Dm_Derby_Ensembl_109 | ||
chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y | ||
probe_datasource=Affy | ||
probe_set=affy_drosgenome1,affy_drosophila_2 | ||
gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=drerio_gene_ensembl | ||
database_name=Danio rerio genes and proteins | ||
file_name=Dr_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=ggallus_gene_ensembl | ||
database_name=Gallus gallus genes and proteins | ||
file_name=Gg_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=hsapiens_gene_ensembl | ||
database_name=Homo sapiens genes and proteins | ||
file_name=Hs_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT | ||
probe_datasource=Affy,Agilent,Illumina | ||
probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
endpoint=http://apr2023.archive.ensembl.org/biomart/ | ||
schema=default | ||
species=mmulatta_gene_ensembl | ||
database_name=Macaca mulatta genes and proteins | ||
file_name=Ml_Derby_Ensembl_109 | ||
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y | ||
probe_datasource=Affy,Agilent | ||
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 | ||
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id |
Oops, something went wrong.