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Merge pull request #6 from bridgedb/new_release
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new config files
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tabbassidaloii authored Oct 3, 2024
2 parents adfbed7 + 4c47228 commit 045d733
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9 changes: 9 additions & 0 deletions configFiles/animals/v108/Bt-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=btaurus_gene_ensembl
database_name=Bos taurus genes and proteins
file_name=Bt_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT
probe_datasource=Affy
probe_set=affy_bovine
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Ce-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=celegans_gene_ensembl
database_name=Caenorhabditis elegans genes and proteins
file_name=Ce_Derby_Ensembl_108
chromosome_name=I,II,III,IV,MtDNA,V,X
probe_datasource=Affy,Agilent
probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304
gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene
11 changes: 11 additions & 0 deletions configFiles/animals/v108/Cf-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=clfamiliaris_gene_ensembl
database_name=Canis familiaris genes and proteins
file_name=Cf_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X
probe_datasource=Affy
probe_set=affy_canine_2
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id


9 changes: 9 additions & 0 deletions configFiles/animals/v108/Ci-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=cintestinalis_gene_ensembl
database_name=Ciona intestinalis genes and proteins
file_name=Ci_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT
probe_datasource=Affy
probe_set=affy_cint06a520380f
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Dm-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=dmelanogaster_gene_ensembl
database_name=Drosophila melanogaster genes and proteins
file_name=Dm_Derby_Ensembl_108
chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y
probe_datasource=Affy
probe_set=affy_drosgenome1,affy_drosophila_2
gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Dr-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=drerio_gene_ensembl
database_name=Danio rerio genes and proteins
file_name=Dr_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT
probe_datasource=Affy,Agilent
probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Gg_v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=ggallus_gene_ensembl
database_name=Gallus gallus genes and proteins
file_name=Gg_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z
probe_datasource=Affy,Agilent
probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Hs-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=hsapiens_gene_ensembl
database_name=Homo sapiens genes and proteins
file_name=Hs_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT
probe_datasource=Affy,Agilent,Illumina
probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Ml-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=mmulatta_gene_ensembl
database_name=Macaca mulatta genes and proteins
file_name=Ml_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y
probe_datasource=Affy,Agilent
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Mm-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=mmusculus_gene_ensembl
database_name=Mus musculus genes and proteins
file_name=Mm_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,X,Y,MT
probe_datasource=Affy,Agilent,Illumina
probe_set=affy_mg_u74a,affy_mg_u74av2,affy_mg_u74b,affy_mg_u74bv2,affy_mg_u74c,affy_mg_u74cv2,affy_moe430a,affy_moe430b,affy_moex_1_0_st_v1,affy_mogene_1_0_st_v1,affy_mogene_2_1_st_v1,affy_mouse430a_2,affy_mouse430_2,affy_mu11ksuba,affy_mu11ksubb,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,illumina_mouseref_8,illumina_mousewg_6_v1,illumina_mousewg_6_v2
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Oa-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=oanatinus_gene_ensembl
database_name=Ornithorhynchus anatinus genes and proteins
file_name=Oa_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,MT,X1,X2,X3,X4,X5
probe_datasource=Affy
probe_set=affy_platypus_exon
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Ova_v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=oaries_gene_ensembl
database_name=Ovis aries genes and proteins
file_name=Ova_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,MT,X
probe_datasource=
probe_set=
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Pt-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=ptroglodytes_gene_ensembl
database_name=Pan troglodytes genes and proteins
file_name=Pt_Derby_Ensembl_108
chromosome_name=1,2A,2B,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT
probe_datasource=Affy,Agilent
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Qc-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=ecaballus_gene_ensembl
database_name=Equus caballus genes and proteins
file_name=Qc_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,MT,X
probe_datasource=Affy,Agilent
probe_set=affy_equgene_1_0_st_v1,affy_equgene_1_1_st_v1,agilent_gpl10248,agilent_gpl13795,agilent_gpl15189,agilent_gpl15190,agilent_gpl15204,agilent_gpl15217,agilent_gpl17689,agilent_gpl20908,agilent_gpl23307
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Rn-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=rnorvegicus_gene_ensembl
database_name=Rattus norvegicus genes and proteins
file_name=Rn_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,X,Y,MT
probe_datasource=Affy,Agilent,Illumina
probe_set=affy_rae230a,affy_rae230b,affy_raex_1_0_st_v1,affy_ragene_1_0_st_v1,affy_ragene_2_1_st_v1,affy_rat230_2,affy_rg_u34a,affy_rg_u34b,affy_rg_u34c,affy_rn_u34,affy_rt_u34,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v3,illumina_ratref_12_v1
gene_datasource=entrezgene_id,go_id,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,rgd_id,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Sc-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=scerevisiae_gene_ensembl
database_name=Saccharomyces cerevisiae genes and proteins
file_name=Sc_Derby_Ensembl_108
chromosome_name=I,II,III,IV,IX,Mito,V,VI,VII,VIII,X,XI,XII,XIII,XIV,XV,XVI
probe_datasource=Affy
probe_set=affy_yeast_2,affy_yg_s98
gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,sgd_gene,uniprotswissprot
9 changes: 9 additions & 0 deletions configFiles/animals/v108/Ss-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=sscrofa_gene_ensembl
database_name=Sus scrofa genes and proteins
file_name=Ss_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,MT,X,Y
probe_datasource=Affy
probe_set=affy_porcine
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
11 changes: 11 additions & 0 deletions configFiles/animals/v108/Xt-v108.config
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endpoint=http://oct2022.archive.ensembl.org/biomart/
schema=default
species=xtropicalis_gene_ensembl
database_name=Xenopus tropicalis genes and proteins
file_name=Xt_Derby_Ensembl_108
chromosome_name=1,2,3,4,5,6,7,8,9,10,MT
probe_datasource=Affy
probe_set=affy_x_tropicalis
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id


9 changes: 9 additions & 0 deletions configFiles/animals/v109/Bt-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=btaurus_gene_ensembl
database_name=Bos taurus genes and proteins
file_name=Bt_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT
probe_datasource=Affy
probe_set=affy_bovine
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Ce-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=celegans_gene_ensembl
database_name=Caenorhabditis elegans genes and proteins
file_name=Ce_Derby_Ensembl_109
chromosome_name=I,II,III,IV,MtDNA,V,X
probe_datasource=Affy,Agilent
probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304
gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene
11 changes: 11 additions & 0 deletions configFiles/animals/v109/Cf-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=clfamiliaris_gene_ensembl
database_name=Canis familiaris genes and proteins
file_name=Cf_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X
probe_datasource=Affy
probe_set=affy_canine_2
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id


9 changes: 9 additions & 0 deletions configFiles/animals/v109/Ci-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=cintestinalis_gene_ensembl
database_name=Ciona intestinalis genes and proteins
file_name=Ci_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT
probe_datasource=Affy
probe_set=affy_cint06a520380f
gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Dm-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=dmelanogaster_gene_ensembl
database_name=Drosophila melanogaster genes and proteins
file_name=Dm_Derby_Ensembl_109
chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y
probe_datasource=Affy
probe_set=affy_drosgenome1,affy_drosophila_2
gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Dr-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=drerio_gene_ensembl
database_name=Danio rerio genes and proteins
file_name=Dr_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT
probe_datasource=Affy,Agilent
probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Gg_v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=ggallus_gene_ensembl
database_name=Gallus gallus genes and proteins
file_name=Gg_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z
probe_datasource=Affy,Agilent
probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Hs-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=hsapiens_gene_ensembl
database_name=Homo sapiens genes and proteins
file_name=Hs_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT
probe_datasource=Affy,Agilent,Illumina
probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id
9 changes: 9 additions & 0 deletions configFiles/animals/v109/Ml-v109.config
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endpoint=http://apr2023.archive.ensembl.org/biomart/
schema=default
species=mmulatta_gene_ensembl
database_name=Macaca mulatta genes and proteins
file_name=Ml_Derby_Ensembl_109
chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y
probe_datasource=Affy,Agilent
probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384
gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id
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