Added KNApSAcK as data source

bridgedb · Sep 2, 2015 · 2418614 · 2418614
1 parent b586987
commit 2418614
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diff --git a/org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt b/org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt
@@ -67,6 +67,7 @@ KEGG Genes	Kg	http://www.genome.jp/kegg/genes.html	http://www.genome.jp/dbget-bi
 KEGG Glycan	Kl	http://www.genome.jp/kegg/glycan/	http://www.genome.jp/dbget-bin/www_bget?gl:$id	G00123	metabolite		1	urn:miriam:kegg.glycan	^G\d+$	KEGG Glycan
 KEGG Pathway	Kp	http://www.genome.jp/kegg/pathway.html	http://www.genome.jp/dbget-bin/www_bget?pathway+$id	hsa00620	pathway		1	urn:miriam:kegg.pathway	^\w{2,4}\d{5}$	KEGG Pathway
 KEGG Reaction	Rk	http://www.genome.jp/kegg/reaction/	http://www.genome.jp/dbget-bin/www_bget?rn:$id	R00100	pathway		1	urn:miriam:kegg.reaction	^R\d+$	KEGG Reaction
+KNApSAcK	Cks	http://kanaya.aist-nara.ac.jp/KNApSAcK/	http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=$id	C00000001	metabolite		1	urn:miriam:knapsack	^C\d{8}	KNApSAcK
 LIPID MAPS	Lm	http://www.lipidmaps.org	http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$id	LMPR0102010012	metabolite		1	urn:miriam:lipidmaps	^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$	LIPID MAPS
 LipidBank	Lb	http://lipidbank.jp/index.html	http://lipidbank.jp/cgi-bin/detail.cgi?id=$id	BBA0001	metabolite		1	urn:miriam:lipidbank	^\w+\d+$	LipidBank
 MACiE	Ma	http://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html	http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$id	M0001	protein		1	urn:miriam:macie	^M\d{4}$	MACiE

diff --git a/org.bridgedb.bio/test/org/bridgedb/bio/DataSourceTxtTest.java b/org.bridgedb.bio/test/org/bridgedb/bio/DataSourceTxtTest.java
@@ -92,4 +92,13 @@ public void testChEMBL() throws Exception {
     	Assert.assertTrue(wikidata.urlPatternKnown());
     	Assert.assertEquals("Cl", wikidata.getSystemCode());
     }
+
+    @Test
+    public void testKNApSAcK() throws Exception {
+    	DataSourceTxt.init();
+    	DataSource wikidata = DataSource.getExistingByFullName("KNApSAcK");
+    	Assert.assertNotNull(wikidata);
+    	Assert.assertTrue(wikidata.urlPatternKnown());
+    	Assert.assertEquals("Cks", wikidata.getSystemCode());
+    }
 }