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brianmanderson committed Dec 28, 2023
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134 changes: 67 additions & 67 deletions .github/workflows/codeql-analysis.yml
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@@ -1,67 +1,67 @@
# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL"

on:
push:
branches: [ main ]
pull_request:
# The branches below must be a subset of the branches above
branches: [ main ]
schedule:
- cron: '28 20 * * 6'

jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest

strategy:
fail-fast: false
matrix:
language: [ 'python' ]
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python' ]
# Learn more:
# https://docs.github.com/en/free-pro-team@latest/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#changing-the-languages-that-are-analyzed

steps:
- name: Checkout repository
uses: actions/checkout@v2

# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# queries: ./path/to/local/query, your-org/your-repo/queries@main

# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2

# ℹ️ Command-line programs to run using the OS shell.
# 📚 https://git.io/JvXDl

# ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
# and modify them (or add more) to build your code if your project
# uses a compiled language

#- run: |
# make bootstrap
# make release

- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL"

on:
push:
branches: [ main ]
pull_request:
# The branches below must be a subset of the branches above
branches: [ main ]
schedule:
- cron: '28 20 * * 6'

jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest

strategy:
fail-fast: false
matrix:
language: [ 'python' ]
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python' ]
# Learn more:
# https://docs.github.com/en/free-pro-team@latest/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#changing-the-languages-that-are-analyzed

steps:
- name: Checkout repository
uses: actions/checkout@v2

# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# queries: ./path/to/local/query, your-org/your-repo/queries@main

# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2

# ℹ️ Command-line programs to run using the OS shell.
# 📚 https://git.io/JvXDl

# ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
# and modify them (or add more) to build your code if your project
# uses a compiled language

#- run: |
# make bootstrap
# make release

- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
68 changes: 34 additions & 34 deletions .github/workflows/new_test.yml
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@@ -1,35 +1,35 @@
name: DicomRTTool Check

on:
push:
branches: [ main, dev ]
pull_request:
braches: [main]
jobs:
build:

runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8"]

steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
name: DicomRTTool Check

on:
push:
branches: [ main, dev ]
pull_request:
braches: [main]
jobs:
build:

runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8"]

steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
pytest
80 changes: 40 additions & 40 deletions .github/workflows/python-publish.yml
Original file line number Diff line number Diff line change
@@ -1,40 +1,40 @@
# This workflow will upload a Python Package using Twine when a release is created
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.

name: Upload Python Package

on:
release:
types: [published]

permissions:
contents: read

jobs:
deploy:

runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: '3.x'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install build
- name: Build package
run: python -m build
- name: Publish package
uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
with:
user: __token__
password: ${{ secrets.PYPI_API_TOKEN }}
# This workflow will upload a Python Package using Twine when a release is created
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.

name: Upload Python Package

on:
release:
types: [published]

permissions:
contents: read

jobs:
deploy:

runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: '3.x'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install build
- name: Build package
run: python -m build
- name: Publish package
uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
with:
user: __token__
password: ${{ secrets.PYPI_API_TOKEN }}
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