GSoC 2021: Support of the simulation-based inference with the model fitting toolbox#64

Merged

mstimberg merged 128 commits intomasterfrom sbi_support

Dec 21, 2021

+4,248-230

Commits on Jun 16, 2021

fix tqdm import and add some stylistic improvements
antelk
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add Inferencer class to __all__
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add sbi in requirements
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add sbi as optional dependency
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add minor stylistic changes
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first steps into the development of sbi wrapper class
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Commits on Jun 17, 2021

update gitignore with sbi-logs directory
antelk
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Commits on Jun 18, 2021

Fix the location of sbi_logs in gitignore
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Add example for simulation-based inference
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[WIP] Add multi-trace support
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Commits on Jun 19, 2021

Further progress of train method
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add multi-round inference support
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add support for multiple output variables
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Commits on Jun 27, 2021

add pt and pth files
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add slight changes in API and load/store functionality
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add changes w.r.t. changes in Inferencer API
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Commits on Jun 28, 2021

add saved numpy arrays
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add storing functionality for theta and x
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Commits on Jun 29, 2021

fix minor issues
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Commits on Jul 7, 2021

fix refactory variable default value
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Commits on Jul 8, 2021

added separate methods for storing and loading data + additional refactoring
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add small changes due to changes in Inferencer class
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add integrate-and-fire neuron example
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add advanced example
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Commits on Jul 9, 2021

clean up
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add better pairplotting
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clean up
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add better handling of keyword arguments
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Commits on Jul 10, 2021

minor updates
antelk
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Commits on Jul 13, 2021

Commits on Jul 17, 2021

Commits on Jul 20, 2021

fix docstrings + change features argument to be optional
antelk
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Commits on Aug 2, 2021

better handling of plotting parameters + additional fixes
antelk
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Commits on Aug 3, 2021

x and x_0 shapes fixed
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fix kwargs forwarding
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adjust for the changes in api
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adjust to changes made in api
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Commits on Aug 5, 2021

Commits on Aug 6, 2021

Commits on Aug 7, 2021

rerun
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fix handling args for multiround inference with snpe
antelk
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Merge pull request #59 from brian-team/multiple_output_var_support
mstimberg
authored

Commits on Aug 9, 2021

Commits on Aug 10, 2021

fix handling of features for different output variables
antelk
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add tqdm to feature extraction loops
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add spike support
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enable inferencer to work without statemonitor
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Commits on Aug 12, 2021

secifiy sbi minimum version
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simplify feature extraction including spikes
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add key error handling for the state monitor object in generate_traces method
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update examples before new PR covering spike support
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remove uncecessary files
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add minor updates
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Commits on Aug 13, 2021

Commits on Aug 14, 2021

update README file
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update the front webpage
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small changes
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add inferencer to api references
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update simple examples with Inferencer
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update table of contents in examples
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change the title of the example using Fitter
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add placehoders for examples using Inferencer
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update introduction section
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small typo fix
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placeholder for detailed info on Inferencer
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finilize the front page
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double instead of single backticks
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Commits on Aug 15, 2021

enable gpu support
antelk
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Merge pull request #61 from brian-team/add_gpu_support
akapet00
authored
add technical details on sbi
antelk
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fix typos
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update howitworks page
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Commits on Aug 16, 2021

update docstrings
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sbi example with simple interface
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minor fixes
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add small changes to examples
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Commits on Aug 17, 2021

fix new data generation in multi-round inference
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update examples after multi-round bug has been fixed
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add examples of using the toolbox for simulation-based inferencer
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small updates
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Commits on Aug 18, 2021

update advanced features list
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fix docstrings for conditional_corrcoeff
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fix typos
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Commits on Aug 20, 2021

figures for the sbi tutorial
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add tutorial on sbi
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fix formating issues and resize images
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fix ref to Inferencer
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remove ref to class from subtitle
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Commits on Aug 21, 2021

update figures for sbi tutorial
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add reference to sbi lib and rename device to sbi_device in infer
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add simulating script for sbi tutorial
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add citation for sbi
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revision of the tutorial
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add doi to sbi ref
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add citations
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Commits on Aug 22, 2021

update gitignore
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fix docstrings
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testing inferencer
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update tests
antelk
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Merge pull request #63 from brian-team/update_tests
akapet00
authored

Commits on Aug 23, 2021

The last commit for GSoC 2021 project!
antelk
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