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meme 5.5.5

meme 5.5.5 #1735

Triggered via pull request April 27, 2024 16:41
@YoshitakaMoYoshitakaMo
synchronize #1677
modmeme
Status Failure
Total duration 7m 11s
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build-bottles.yml

on: pull_request
Matrix: build-bottles
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2 errors and 8 warnings
`brew install --verbose --build-bottle brewsci/bio/meme` failed on Linux!: Formula/meme.rb#L24
.5.5/share/meme-5.5.5/doc/examples/sea_example_output_files' /usr/bin/install -c -m 644 sea_example_output_files/sites.tsv sea_example_output_files/sea.tsv sea_example_output_files/sequences.tsv sea_example_output_files/sea.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/sea_example_output_files' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_1' /usr/bin/install -c -m 644 memechip_example_output_files/spamo_out_1/spamo.tsv memechip_example_output_files/spamo_out_1/spamo.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_1' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files' /usr/bin/install -c -m 644 xstreme_example_output_files/background xstreme_example_output_files/xstreme.tsv xstreme_example_output_files/xstreme.txt xstreme_example_output_files/combined.meme xstreme_example_output_files/motif_alignment.txt xstreme_example_output_files/xstreme.html xstreme_example_output_files/progress_log.txt '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_2' /usr/bin/install -c -m 644 memechip_example_output_files/spamo_out_2/spamo.tsv memechip_example_output_files/spamo_out_2/spamo.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_2' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/streme_out' /usr/bin/install -c -m 644 memechip_example_output_files/streme_out/sites.tsv memechip_example_output_files/streme_out/streme.xml memechip_example_output_files/streme_out/sequences.tsv memechip_example_output_files/streme_out/streme.txt memechip_example_output_files/streme_out/streme.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/streme_out' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files/sea_disc_out' /usr/bin/install -c -m 644 xstreme_example_output_files/sea_disc_out/sea.tsv xstreme_example_output_files/sea_disc_out/sea.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files/sea_disc_out' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_1' /usr/bin/install -c -m 644 memechip_example_output_files/fimo_out_1/fimo.tsv memechip_example_output_files/fimo_out_1/fimo.xml memechip_example_output_files/fimo_out_1/fimo.gff memechip_example_output_files/fimo_out_1/fimo.html memechip_example_output_files/fimo_out_1/cisml.xml memechip_example_output_files/fimo_out_1/best_site.narrowPeak '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_1' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_2' /usr/bin/install -c -m 644 memechip_example_output_files/fimo_out_2/fimo.tsv memechip_example_output_files/fimo_out_2/fimo.xml memechip_example_output_files/fimo_out_2/fimo.gff memechip_example_output_files/fimo_out_2/fimo.html memechip_example_output_files/fimo_out_2/cisml.xml memechip_example_output_files/fimo_out_2/best_site.narrowPeak '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_2' /usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/mast_example_output_files' /usr/bin/install -c -m 644 mast_example_output_files/mast.html mast_example_output_files/mast.xml mast_example_output_files/mast.txt '/home/linuxbrew/.linuxbrew/Cell
build-bottles (ubuntu-latest)
Process completed with exit code 1.
build-bottles (macos-14)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
`brew test --verbose brewsci/bio/meme` failed on macOS Sonoma (14) on Apple Silicon!: Formula/meme.rb#L52
/opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/bin/bundle clean ==> Testing brewsci/bio/meme ==> /opt/homebrew/Cellar/meme/5.5.5/bin/meme /opt/homebrew/Cellar/meme/5.5.5/share/meme/At.s Failed to execute: /opt/homebrew/Cellar/meme/5.5.5/bin/meme Error: brewsci/bio/meme: failed An exception occurred within a child process: BuildError: Failed executing: /opt/homebrew/Cellar/meme/5.5.5/bin/meme /opt/homebrew/Cellar/meme/5.5.5/share/meme/At.s /opt/homebrew/Library/Homebrew/formula.rb:2876:in `block in system' /opt/homebrew/Library/Homebrew/formula.rb:2812:in `open' /opt/homebrew/Library/Homebrew/formula.rb:2812:in `system' /opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `bind_call' /opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `validate_call' /opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added' /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/meme.rb:53:in `block in <class:Meme>' /opt/homebrew/Library/Homebrew/formula.rb:2647:in `block (3 levels) in run_test' /opt/homebrew/Library/Homebrew/extend/kernel.rb:514:in `with_env' /opt/homebrew/Library/Homebrew/formula.rb:2646:in `block (2 levels) in run_test' /opt/homebrew/Library/Homebrew/formula.rb:1130:in `with_logging' /opt/homebrew/Library/Homebrew/formula.rb:2645:in `block in run_test' /opt/homebrew/Library/Homebrew/mktemp.rb:76:in `block in run' /opt/homebrew/Library/Homebrew/mktemp.rb:76:in `chdir' /opt/homebrew/Library/Homebrew/mktemp.rb:76:in `run' /opt/homebrew/Library/Homebrew/formula.rb:2926:in `mktemp' /opt/homebrew/Library/Homebrew/formula.rb:2639:in `run_test' /opt/homebrew/Library/Homebrew/test.rb:46:in `block in <main>' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:107:in `block in timeout' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `block in catch' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:123:in `timeout' /opt/homebrew/Library/Homebrew/test.rb:50:in `<main>'
build-bottles (macos-14)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
build-bottles (ubuntu-latest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
build-bottles (ubuntu-latest)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
build-bottles (macos-13)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
`brew test --verbose brewsci/bio/meme` failed on macOS Ventura (13)!: Formula/meme.rb#L52
/usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/bin/bundle clean ==> Testing brewsci/bio/meme ==> /usr/local/Cellar/meme/5.5.5/bin/meme /usr/local/Cellar/meme/5.5.5/share/meme/At.s Failed to execute: /usr/local/Cellar/meme/5.5.5/bin/meme Error: brewsci/bio/meme: failed An exception occurred within a child process: BuildError: Failed executing: /usr/local/Cellar/meme/5.5.5/bin/meme /usr/local/Cellar/meme/5.5.5/share/meme/At.s /usr/local/Homebrew/Library/Homebrew/formula.rb:2876:in `block in system' /usr/local/Homebrew/Library/Homebrew/formula.rb:2812:in `open' /usr/local/Homebrew/Library/Homebrew/formula.rb:2812:in `system' /usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `bind_call' /usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `validate_call' /usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added' /usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/meme.rb:53:in `block in <class:Meme>' /usr/local/Homebrew/Library/Homebrew/formula.rb:2647:in `block (3 levels) in run_test' /usr/local/Homebrew/Library/Homebrew/extend/kernel.rb:514:in `with_env' /usr/local/Homebrew/Library/Homebrew/formula.rb:2646:in `block (2 levels) in run_test' /usr/local/Homebrew/Library/Homebrew/formula.rb:1130:in `with_logging' /usr/local/Homebrew/Library/Homebrew/formula.rb:2645:in `block in run_test' /usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `block in run' /usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `chdir' /usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `run' /usr/local/Homebrew/Library/Homebrew/formula.rb:2926:in `mktemp' /usr/local/Homebrew/Library/Homebrew/formula.rb:2639:in `run_test' /usr/local/Homebrew/Library/Homebrew/test.rb:46:in `block in <main>' /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:107:in `block in timeout' /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `block in catch' /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch' /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch' /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:123:in `timeout' /usr/local/Homebrew/Library/Homebrew/test.rb:50:in `<main>'
build-bottles (macos-13)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.