meme 5.5.5 #1735
build-bottles.yml
on: pull_request
Matrix: build-bottles
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2 errors and 8 warnings
`brew install --verbose --build-bottle brewsci/bio/meme` failed on Linux!:
Formula/meme.rb#L24
.5.5/share/meme-5.5.5/doc/examples/sea_example_output_files'
/usr/bin/install -c -m 644 sea_example_output_files/sites.tsv sea_example_output_files/sea.tsv sea_example_output_files/sequences.tsv sea_example_output_files/sea.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/sea_example_output_files'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_1'
/usr/bin/install -c -m 644 memechip_example_output_files/spamo_out_1/spamo.tsv memechip_example_output_files/spamo_out_1/spamo.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_1'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files'
/usr/bin/install -c -m 644 xstreme_example_output_files/background xstreme_example_output_files/xstreme.tsv xstreme_example_output_files/xstreme.txt xstreme_example_output_files/combined.meme xstreme_example_output_files/motif_alignment.txt xstreme_example_output_files/xstreme.html xstreme_example_output_files/progress_log.txt '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_2'
/usr/bin/install -c -m 644 memechip_example_output_files/spamo_out_2/spamo.tsv memechip_example_output_files/spamo_out_2/spamo.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/spamo_out_2'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/streme_out'
/usr/bin/install -c -m 644 memechip_example_output_files/streme_out/sites.tsv memechip_example_output_files/streme_out/streme.xml memechip_example_output_files/streme_out/sequences.tsv memechip_example_output_files/streme_out/streme.txt memechip_example_output_files/streme_out/streme.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/streme_out'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files/sea_disc_out'
/usr/bin/install -c -m 644 xstreme_example_output_files/sea_disc_out/sea.tsv xstreme_example_output_files/sea_disc_out/sea.html '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/xstreme_example_output_files/sea_disc_out'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_1'
/usr/bin/install -c -m 644 memechip_example_output_files/fimo_out_1/fimo.tsv memechip_example_output_files/fimo_out_1/fimo.xml memechip_example_output_files/fimo_out_1/fimo.gff memechip_example_output_files/fimo_out_1/fimo.html memechip_example_output_files/fimo_out_1/cisml.xml memechip_example_output_files/fimo_out_1/best_site.narrowPeak '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_1'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_2'
/usr/bin/install -c -m 644 memechip_example_output_files/fimo_out_2/fimo.tsv memechip_example_output_files/fimo_out_2/fimo.xml memechip_example_output_files/fimo_out_2/fimo.gff memechip_example_output_files/fimo_out_2/fimo.html memechip_example_output_files/fimo_out_2/cisml.xml memechip_example_output_files/fimo_out_2/best_site.narrowPeak '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/memechip_example_output_files/fimo_out_2'
/usr/bin/mkdir -p '/home/linuxbrew/.linuxbrew/Cellar/meme/5.5.5/share/meme-5.5.5/doc/examples/mast_example_output_files'
/usr/bin/install -c -m 644 mast_example_output_files/mast.html mast_example_output_files/mast.xml mast_example_output_files/mast.txt '/home/linuxbrew/.linuxbrew/Cell
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build-bottles (ubuntu-latest)
Process completed with exit code 1.
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build-bottles (macos-14)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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`brew test --verbose brewsci/bio/meme` failed on macOS Sonoma (14) on Apple Silicon!:
Formula/meme.rb#L52
/opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/bin/bundle clean
==> Testing brewsci/bio/meme
==> /opt/homebrew/Cellar/meme/5.5.5/bin/meme /opt/homebrew/Cellar/meme/5.5.5/share/meme/At.s
Failed to execute: /opt/homebrew/Cellar/meme/5.5.5/bin/meme
Error: brewsci/bio/meme: failed
An exception occurred within a child process:
BuildError: Failed executing: /opt/homebrew/Cellar/meme/5.5.5/bin/meme /opt/homebrew/Cellar/meme/5.5.5/share/meme/At.s
/opt/homebrew/Library/Homebrew/formula.rb:2876:in `block in system'
/opt/homebrew/Library/Homebrew/formula.rb:2812:in `open'
/opt/homebrew/Library/Homebrew/formula.rb:2812:in `system'
/opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `bind_call'
/opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `validate_call'
/opt/homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added'
/opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/meme.rb:53:in `block in <class:Meme>'
/opt/homebrew/Library/Homebrew/formula.rb:2647:in `block (3 levels) in run_test'
/opt/homebrew/Library/Homebrew/extend/kernel.rb:514:in `with_env'
/opt/homebrew/Library/Homebrew/formula.rb:2646:in `block (2 levels) in run_test'
/opt/homebrew/Library/Homebrew/formula.rb:1130:in `with_logging'
/opt/homebrew/Library/Homebrew/formula.rb:2645:in `block in run_test'
/opt/homebrew/Library/Homebrew/mktemp.rb:76:in `block in run'
/opt/homebrew/Library/Homebrew/mktemp.rb:76:in `chdir'
/opt/homebrew/Library/Homebrew/mktemp.rb:76:in `run'
/opt/homebrew/Library/Homebrew/formula.rb:2926:in `mktemp'
/opt/homebrew/Library/Homebrew/formula.rb:2639:in `run_test'
/opt/homebrew/Library/Homebrew/test.rb:46:in `block in <main>'
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:107:in `block in timeout'
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `block in catch'
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch'
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch'
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:123:in `timeout'
/opt/homebrew/Library/Homebrew/test.rb:50:in `<main>'
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build-bottles (macos-14)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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build-bottles (ubuntu-latest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
build-bottles (ubuntu-latest)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
|
build-bottles (macos-13)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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`brew test --verbose brewsci/bio/meme` failed on macOS Ventura (13)!:
Formula/meme.rb#L52
/usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/bin/bundle clean
==> Testing brewsci/bio/meme
==> /usr/local/Cellar/meme/5.5.5/bin/meme /usr/local/Cellar/meme/5.5.5/share/meme/At.s
Failed to execute: /usr/local/Cellar/meme/5.5.5/bin/meme
Error: brewsci/bio/meme: failed
An exception occurred within a child process:
BuildError: Failed executing: /usr/local/Cellar/meme/5.5.5/bin/meme /usr/local/Cellar/meme/5.5.5/share/meme/At.s
/usr/local/Homebrew/Library/Homebrew/formula.rb:2876:in `block in system'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2812:in `open'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2812:in `system'
/usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `bind_call'
/usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/call_validation.rb:270:in `validate_call'
/usr/local/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.1.0/gems/sorbet-runtime-0.5.11358/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added'
/usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/meme.rb:53:in `block in <class:Meme>'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2647:in `block (3 levels) in run_test'
/usr/local/Homebrew/Library/Homebrew/extend/kernel.rb:514:in `with_env'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2646:in `block (2 levels) in run_test'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1130:in `with_logging'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2645:in `block in run_test'
/usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `block in run'
/usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `chdir'
/usr/local/Homebrew/Library/Homebrew/mktemp.rb:76:in `run'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2926:in `mktemp'
/usr/local/Homebrew/Library/Homebrew/formula.rb:2639:in `run_test'
/usr/local/Homebrew/Library/Homebrew/test.rb:46:in `block in <main>'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:107:in `block in timeout'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `block in catch'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:36:in `catch'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/lib/ruby/3.1.0/timeout.rb:123:in `timeout'
/usr/local/Homebrew/Library/Homebrew/test.rb:50:in `<main>'
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build-bottles (macos-13)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
|