This repository has been archived by the owner on Jan 3, 2024. It is now read-only.
Update to py311 and remove cibuildwheel #744
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: [ '*' ] | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/lint@v2 | |
| manifest: | |
| name: Check Manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/check_manifest@v2 | |
| test: | |
| needs: [linting, manifest] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Run all supported Python versions on linux | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| # Include one windows, one macos run | |
| include: | |
| - os: macos-latest | |
| python-version: "3.11" | |
| - os: windows-latest | |
| python-version: "3.11" | |
| steps: | |
| - name: Cache tensorflow model | |
| uses: actions/cache@v3 | |
| with: | |
| path: "~/.cellfinder" | |
| key: models-${{ hashFiles('~/.cellfinder/**') }} | |
| - uses: neuroinformatics-unit/actions/test@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Run cellfinder tests to make sure cellfinder is still compatible | |
| # with cellfinder-core | |
| test_cellfinder: | |
| needs: [linting, manifest] | |
| name: Run cellfinder tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cache tensorflow model | |
| uses: actions/cache@v3 | |
| with: | |
| path: "~/.cellfinder" | |
| key: models-${{ hashFiles('~/.cellfinder/**') }} | |
| - name: Checkout cellfinder | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'brainglobe/cellfinder' | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.11" | |
| - name: Install test dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| # Install latest SHA on this cellfinder-core branch | |
| python -m pip install git+$GITHUB_SERVER_URL/$GITHUB_REPOSITORY@$GITHUB_SHA | |
| # Install checked out copy of cellfinder | |
| python -m pip install .[dev] | |
| - name: Run cellfinder tests | |
| run: | | |
| python -m pytest --color=yes -v | |
| build_sdist_wheel: | |
| name: Build source distribution and wheel | |
| needs: [test, test_cellfinder] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | |
| upload_all: | |
| name: Publish build distributions | |
| needs: [build_sdist_wheel] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/[email protected] | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.TWINE_API_KEY }} |