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Add seed location for offvertex seeding case and cleanup #15

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Add seed location for offvertex seeding case and cleanup #15

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b5da2b2
add seed location for offvertex seeding case
bradyrx May 28, 2019
bdb608a
remove mkl addition, since newer E3SM cases don't need this on IC
bradyrx May 28, 2019
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10 changes: 2 additions & 8 deletions generate_E3SM_case.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -104,12 +104,6 @@ echo "Setting nprocs to ${nproc_ice} for the ice."
./xmlchange -s --file env_mach_pes.xml ROOTPE_OCN=${nproc_ice}
cd ${HOMEDIR}

# Edit env_mach_specific to add mkl.
if [ ${mach} == "grizzly" ] || [ ${mach} == "wolf" ]; then
echo "Editing env_mach_specific..."
python py/update_env_mach_specific.py --file ${E3SM_DIR}/${casename}/env_mach_specific.xml
fi

# Case setup
cd ${E3SM_DIR}/${casename}
echo "Setting up case directory..."
Expand Down Expand Up @@ -178,10 +172,10 @@ if ${PARTICLES_ON}; then
if ${SOfilter}; then
python make_particle_file.py -i ${init} -g ${graph} -p ${nproc_ocean} -t ${parttype} \
--nvertlevels ${nvertlevels} --spatialfilter SouthernOceanXYZ --downsample ${downsample} \
-o ${RUNDIR}/particles.nc
-l ${seedLoc} -o ${RUNDIR}/particles.nc
else
python make_particle_file.py -i ${init} -g ${graph} -p ${nproc_ocean} -t ${parttype} \
--nvertlevels ${nvertlevels} --downsample ${downsample} \
--nvertlevels ${nvertlevels} --downsample ${downsample} -l ${seedLoc} \
-o ${RUNDIR}/particles.nc
fi
fi
Expand Down