bugfix

images/Dockerfile.gpu

@@ -1,4 +1,38 @@
-FROM zcr.thelio.carlboettiger.info/boettiger-lab/k8s-spatial
+FROM docker.io/rocker/ml
+
+ENV NB_USER rstudio
+ENV VIRTUAL_ENV /opt/venv
+ENV PATH ${VIRTUAL_ENV}/bin:$PATH
+
+RUN /rocker_scripts/install_jupyter.sh
+RUN python3 -m pip install numpy
+RUN chown -R ${NB_USER}:staff ${VIRTUAL_ENV} && chmod -R g+rw ${VIRTUAL_ENV}
+
+RUN /rocker_scripts/experimental/install_dev_osgeo.sh
+
+COPY apt.txt apt.txt
+RUN apt-get update -qq && xargs sudo apt-get -y install < apt.txt
+
+# install codeserver
+#RUN curl -fsSL https://code-server.dev/install.sh | sh && rm -rf .cache
+RUN wget https://github.com/coder/code-server/releases/download/v4.89.1/code-server_4.89.1_amd64.deb && dpkg -i code-server*.deb && rm code-server*.deb
+
+# some preferences
+RUN git config --system pull.rebase false && \
+    git config --system credential.helper 'cache --timeout=30000' && \
+    echo '"\e[5~": history-search-backward' >> /etc/inputrc && \
+    echo '"\e[6~": history-search-forward' >> /etc/inputrc
+
+USER ${NB_USER}
+WORKDIR /home/${NB_USER}
+
+RUN usermod -s /bin/bash ${NB_USER}
+COPY spatial-requirements.txt /tmp/spatial-requirements.txt
+RUN python3 -m pip install --no-cache-dir -r /tmp/spatial-requirements.txt
+
+## Register the environment with ipykernel, mostly for vscode to find it
+RUN python3 -m ipykernel install --user --name=venv
+
 
 COPY rl-requirements.txt /tmp/rl-requirements.txt
 RUN python3 -m pip install --no-cache-dir -r /tmp/rl-requirements.txt