ollama?

boettiger-lab · Jul 11, 2024 · 5b66e90 · 5b66e90
1 parent 3a9e996
commit 5b66e90
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Showing 2 changed files with 24 additions and 17 deletions.
diff --git a/images/Dockerfile.gpu b/images/Dockerfile.gpu
@@ -18,6 +18,11 @@ RUN apt-get update -qq && xargs sudo apt-get -y install < apt.txt
 RUN curl -fsSL https://code-server.dev/install.sh | sh && rm -rf .cache
 #RUN wget https://github.com/coder/code-server/releases/download/v4.89.1/code-server_4.89.1_amd64.deb && dpkg -i code-server*.deb && rm code-server*.deb
 
+# ollama
+RUN curl -fsSL https://ollama.com/install.sh | sh
+
+
+
 # some preferences
 RUN git config --system pull.rebase false && \
     git config --system credential.helper 'cache --timeout=30000' && \
@@ -29,19 +34,19 @@ WORKDIR /home/${NB_USER}
 
 RUN usermod -s /bin/bash ${NB_USER}
 COPY spatial-requirements.txt /tmp/spatial-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/spatial-requirements.txt
+RUN python3 -m pip install --no-cache-dir -r /tmp/spatial-requirements.txt && rm -rf /tmp/*
 COPY rl-requirements.txt /tmp/rl-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/rl-requirements.txt
+RUN python3 -m pip install --no-cache-dir -r /tmp/rl-requirements.txt && rm -rf /tmp/*
 COPY jupyter-requirements.txt /tmp/jupyter-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/jupyter-requirements.txt
+RUN python3 -m pip install --no-cache-dir -r /tmp/jupyter-requirements.txt && rm -rf /tmp/*
 
 ## Register the environment with ipykernel, mostly for vscode to find it
 RUN python3 -m ipykernel install --user --name=venv
 
 
-# USER root 
-# COPY install.R /tmp/install.R
-# RUN Rscript /tmp/install.R && rm /tmp/install.R && chown -R ${NB_USER}:staff ${R_HOME}/site-library 
-# USER ${NB_USER}
+#USER root 
+#COPY install.R /tmp/install.R
+#RUN Rscript /tmp/install.R && rm /tmp/install.R && chown -R ${NB_USER}:staff ${R_HOME}/site-library 
+#USER ${NB_USER}
 
 
diff --git a/jupyterhub/thelio-config.yaml b/jupyterhub/thelio-config.yaml
@@ -28,13 +28,15 @@ singleuser:
 #      - name: shm-volume
 #        emptyDir:
 #          medium: Memory
-#  extraFiles:
-#    remove-exporters:
-#      mountPath: /etc/jupyter/jupyter_notebook_config.py
-#    culling-config:
-#      data:
-#        ContentsManager:
-#          allow_hidden: true
+  extraFiles:
+    jupyter_server_config.json:
+        mountPath: /usr/local/etc/jupyter/jupyter_server_config.json
+        data:
+          # Allow JupyterLab to show the 'View -> Show Hidden Files' option
+          # in the menu. Defaults are not changed.
+          # https://github.com/jupyterlab/jupyterlab/issues/11304#issuecomment-945466766
+          ContentsManager:
+            allow_hidden: true
   profileList:
     - display_name: "CPU"
       slug: rocker
@@ -60,7 +62,7 @@ singleuser:
                 mem_limit: 49861460992
               default: true
       kubespawner_override:
-        image: "zcr.thelio.carlboettiger.info/boettiger-lab/k8s:latest"
+        image: "ghcr.io/boettiger-lab/k8s:latest"
         default_url: /lab # change to /rstudio to go straight to RStudio
         working_dir: /home/rstudio
     - display_name: "GPU"
@@ -72,7 +74,7 @@ singleuser:
       profile_options:
         resource_allocation: *profile_options_resource_allocation 
       kubespawner_override:
-        image: "zcr.thelio.carlboettiger.info/boettiger-lab/k8s-gpu:latest"
+        image: "ghcr.io/boettiger-lab/k8s-gpu:latest"
         default_url: /lab # change to /rstudio to go straight to RStudio
         working_dir: /home/rstudio
     - display_name: "NASA Image"
@@ -81,7 +83,7 @@ singleuser:
       profile_options:
         resource_allocation: *profile_options_resource_allocation 
       kubespawner_override:
-        image: "zcr.thelio.carlboettiger.info/boettiger-lab/nasa-tops:latest"
+        image: "ghcr.io/boettiger-lab/nasa-tops:latest"
     - display_name: "Bring your own image"
       description: Specify your own docker image (must have python and jupyterhub installed in it)
       slug: custom