nxwater_bacteria

Code for all data preparation and analysis for bacteria sequencing data within the ARS NxWater Akron experiment

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Bacteria		Bacteria
Data		Data
Output		Output
PICRUSt2		PICRUSt2
Report		Report
SCINet		SCINet
Statistics		Statistics
tmp		tmp
.gitattributes		.gitattributes
.gitignore		.gitignore
01_making_mapping_file.ipynb		01_making_mapping_file.ipynb
02_sequencing_report_data_prep.ipynb		02_sequencing_report_data_prep.ipynb
03_picrust2.ipynb		03_picrust2.ipynb
04.1_simple_rf.ipynb		04.1_simple_rf.ipynb
04_brute_force_figures.ipynb		04_brute_force_figures.ipynb
05_rf_N_regression.ipynb		05_rf_N_regression.ipynb
05_rf_test.ipynb		05_rf_test.ipynb
NxW MinION master list.xlsx		NxW MinION master list.xlsx
README.md		README.md
data_for_adam.csv		data_for_adam.csv
mapping_file_taxonomy.csv		mapping_file_taxonomy.csv
mapping_file_with_metadata_harvest_biomass_2022.csv		mapping_file_with_metadata_harvest_biomass_2022.csv
rel_abund_16S_ABC.csv		rel_abund_16S_ABC.csv
rel_abund_16S_ABC_qpcr_adj.csv		rel_abund_16S_ABC_qpcr_adj.csv

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