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Merge pull request #90 from kyleniemeyer/patch-1
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minor edits to paper
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bjodah authored Apr 4, 2018
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Expand Up @@ -8,7 +8,7 @@ authors:
orcid: 0000-0003-0596-0222
affiliation: 1
affiliations:
- name: KTH Royal Institute of Technology
- name: KTH Royal Institute of Technology, Stockholm, Sweden
index: 1
date: 26 January 2018
bibliography: paper.bib
Expand All @@ -26,7 +26,7 @@ literature.

Its intended audience is primarily researchers and engineers who need
to perform modelling work. But since the intermediate representations
of e.g., ODE systems and systems of non-linear equations are available
of, e.g., ODE systems and systems of non-linear equations are available
symbolically, ChemPy may also be used in an educational setting.

Substances are represented by a class that holds their names and, optionally,
Expand All @@ -37,7 +37,7 @@ parser. Reactions are represented through their stoichiometry and
thermodynamic/kinetic parameters. If the stoichiometry of a reaction
is unknown, ChemPy can balance it based on the composition of the
substances. The classes for representing systems of reactions provide
methods to analyze e.g., if there are disjoint sets of reactions, or if all
methods to analyze, e.g., if there are disjoint sets of reactions, or if all
are connected in the same network. The classes also offer
a series of checks performed at initialization, ensuring balanced
reactions with sane coefficients and consistent units.
Expand All @@ -55,7 +55,7 @@ The under-determined formulation can also be expressed in a canoncial form
with coefficients minimzed using PuLP [@mitchell2011pulp;@lougee2003common].
In fact, most equations and parametrizations in ChemPy support---in addition to
NumPy arrays [@vanderWalt2011]---also symbolic input, as well as arrays
with explicit units. The latter allows ChemPy to check that e.g., the correct
with explicit units. The latter allows ChemPy to check that, e.g., the correct
dimensionality with respect to reaction order is used for rate constants.

# Features
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