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Releases: biowdl/expression-quantification

Release 1.4.0

15 Jul 08:59
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  • Replaced Stringtie merge with gffcompare for merging of stringtie
    assembly results.
  • Downgrade stringtie to version 1.3.6.
  • Make it possible to not run Stringtie.
  • When multiple TPM/FPKM values are returned for a single gene by
    stringtie, they will now be added together in the multi-sample
    expression tables. Previously only the last value encountered would be
    used.
  • Updated default docker image for collect-columns (now uses
    version 1.0.0 instead of 0.2.0).

Release 1.3.0

05 Aug 09:30
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  • Updated default docker images.
  • Tasks were updated to contain the time_minutes runtime attribute and
    associated timeMinutes input, describing the maximum time the task will
    take to run.

Release 1.2.0

16 Mar 09:53
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  • Add proper copyright headers to WDL files. So the free software license
    is clear to end users who wish to adapt and modify.
  • Added inputs overview to the docs.
  • Added parameter_meta.
  • Added wdl-aid to linting.
  • Updated default htseq image to version 0.11.2
  • Add miniwdl to linting.

Release 1.1.0

09 Oct 08:07
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  • Update tasks so they pass the correct memory requirements to the
    execution engine. Memory requirements are set on a per-task (not
    per-core) basis.

v1.0.0

25 Sep 13:49
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Release 1.0.0