Releases: biowdl/expression-quantification
Releases · biowdl/expression-quantification
Release 1.4.0
- Replaced Stringtie merge with gffcompare for merging of stringtie
assembly results. - Downgrade stringtie to version 1.3.6.
- Make it possible to not run Stringtie.
- When multiple TPM/FPKM values are returned for a single gene by
stringtie, they will now be added together in the multi-sample
expression tables. Previously only the last value encountered would be
used. - Updated default docker image for collect-columns (now uses
version 1.0.0 instead of 0.2.0).
Release 1.3.0
- Updated default docker images.
- Tasks were updated to contain the
time_minutes
runtime attribute and
associatedtimeMinutes
input, describing the maximum time the task will
take to run.
Release 1.2.0
- Add proper copyright headers to WDL files. So the free software license
is clear to end users who wish to adapt and modify. - Added inputs overview to the docs.
- Added parameter_meta.
- Added wdl-aid to linting.
- Updated default htseq image to version 0.11.2
- Add miniwdl to linting.
Release 1.1.0
- Update tasks so they pass the correct memory requirements to the
execution engine. Memory requirements are set on a per-task (not
per-core) basis.