hotfix: lower numpy requirement from 2.0 to 1.25 to allow biotite ins…

[Croydon-Brixton]

Hi @padix-key --
here's a quick hotfix to lower the version requirement for numpy to 1.25, as it otherwise leads to a version conflict when installing the latest biotite v1.0.0 release
(c.f. https://github.com/biotite-dev/biotite/blob/main/pyproject.toml#L25-L26)

[padix-key]

Thanks for the fix! This is some oversight from our side. @JHKru Do we want to release a patch version immediately after merge? I assume this might affect a lot of users.

[JHKru]

Yes, sure; sorry for the late reply.

[BartoszJanuszNA]

Hi! Sorry for digging it up, but don't you think you should also lower the numpy version in [build-system] requires section? I am having conflicts in my project because of that.

The conflict is caused by:
    biotite 1.0.0 depends on numpy>=1.25
    proteinmpnn 0.1.0 depends on numpy<2.0
    biotraj 1.2.0 depends on numpy>=2.0
    biotite 1.0.0 depends on numpy>=1.25
    biotraj 1.1.0 depends on numpy>=2.0

[padix-key]

The [build-system] section lists only requirements for building the package, so it does not affect the dependencies for the actual environment. However, version 1.2.0 had a wrong version pin in the dependencies section. For that reason 1.2.1 was released, which relaxed numpy >= 1.25, but this biotraj version is not listed in your output. Which package manager are you using?

[BartoszJanuszNA]

You are right, pip was not picking up biotraj 1.2.1 because of scipy version conflict with another of my dependencies, and was giving me misleading error. I managed to resolve it. Thank you!