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Fix to Issue#128 #130

Merged
merged 6 commits into from
Aug 12, 2021
Merged

Fix to Issue#128 #130

merged 6 commits into from
Aug 12, 2021

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erikyao
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@erikyao erikyao commented Aug 12, 2021

This PR fixes Issue#128.

The core of this fix is to delete the ill-placed break statement on Line 156 of clinvar_xml_parser.py (see legacy code #156 vs proposed code). Some attributes (not only proteins) will be discarded after the break statement is executed.

Other changes introduced in this PR are:

  1. Code formatting, variables/functions renaming, and addition of comments in clinvar_xml_parser.py
  2. Deletion of the unused legacy src/hub/dataload/sources/clinvar/clinvar_parser.py

@erikyao erikyao merged commit eee4a84 into biothings:master Aug 12, 2021
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ClinVar Protein HGVS not being returned correctly?
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