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Merge pull request #478 from deepakunni3/update-links-in-kgx-specific…
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Update links to biolink model docs in kgx-format.md
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sierra-moxon authored Feb 12, 2024
2 parents bad8d9b + ffa59b6 commit 6db5d26
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions specification/kgx-format.md
Original file line number Diff line number Diff line change
Expand Up @@ -45,8 +45,8 @@ Each node record has a set of elements that describes the node.
#### Core Node Record Elements

There are 2 required elements for a Node record:
- [id](https://biolink.github.io/biolink-model/docs/id)
- [category](https://biolink.github.io/biolink-model/docs/category)
- [id](https://biolink.github.io/biolink-model/id)
- [category](https://biolink.github.io/biolink-model/category)


##### id
Expand All @@ -57,7 +57,7 @@ The `id` element must have a value as a CURIE that uniquely identifies the node
##### category

The `category` element is used to name the high level class in which this entity is categorized.
The element is a multivalued list which must have a value from the Biolink [NamedThing](https://biolink.github.io/biolink-model/docs/NamedThing) hierarchy.
The element is a multivalued list which must have a value from the Biolink [NamedThing](https://biolink.github.io/biolink-model/NamedThing) hierarchy.


#### Optional Node Record Elements
Expand All @@ -67,7 +67,7 @@ The element is a multivalued list which must have a value from the Biolink [Name

A node can have additional properties, as defined in the Biolink Model.

For example, [name](https://biolink.github.io/biolink-model/docs/name), [description](https://biolink.github.io/biolink-model/docs/description), and [xref](https://biolink.github.io/biolink-model/docs/xref). Nodes can also optionally have a [`provided_by`](https://biolink.github.io/biolink-model/docs/provided_by) property.
For example, [name](https://biolink.github.io/biolink-model/name), [description](https://biolink.github.io/biolink-model/description), and [xref](https://biolink.github.io/biolink-model/xref). Nodes can also optionally have a [`provided_by`](https://biolink.github.io/biolink-model/provided_by) property.


##### Non-Biolink Model elements
Expand All @@ -84,9 +84,9 @@ Each edge record has a set of elements that describes the edge.
#### Core Edge Record Elements

There are 3 required elements for an Edge record:
- [subject](https://biolink.github.io/biolink-model/docs/subject)
- [predicate](https://biolink.github.io/biolink-model/docs/predicate)
- [object](https://biolink.github.io/biolink-model/docs/object)
- [subject](https://biolink.github.io/biolink-model/subject)
- [predicate](https://biolink.github.io/biolink-model/predicate)
- [object](https://biolink.github.io/biolink-model/object)

##### subject

Expand All @@ -96,7 +96,7 @@ The `subject` element is used to refer to the source node in an edge/statement/a
##### predicate

The `predicate` element is used to refer to the predicate/relationship that links a source node to a target node in an edge/statement/assertion.
This element must have a value from the Biolink [related_to](https://biolink.github.io/biolink-model/docs/related_to) hierarchy.
This element must have a value from the Biolink [related_to](https://biolink.github.io/biolink-model/related_to) hierarchy.


##### object
Expand All @@ -106,7 +106,7 @@ The `object` element is used to refer to the target node in an edge/statement/as

#### Edge Provenance

Edge provenance, if specified, should be specified by one of a fixed set of elements. The original [`provided_by`](https://biolink.github.io/biolink-model/docs/provided_by) property is now deprecated for edges in favor of the Biolink Model 2.0 defined [`knowledge_source`](https://biolink.github.io/biolink-model/docs/knowledge_source) association slot or one of its descendents - [`aggregator_knowledge_source`](https://biolink.github.io/biolink-model/docs/aggregator_knowledge_source), [`primary_knowledge_source`](https://biolink.github.io/biolink-model/docs/primary_knowledge_source) and [`original_knowledge_source`](https://biolink.github.io/biolink-model/docs/original_knowledge_source) - or the related association slot, [`supporting_data_source`](https://biolink.github.io/biolink-model/docs/supporting_data_source).
Edge provenance, if specified, should be specified by one of a fixed set of elements. The original [`provided_by`](https://biolink.github.io/biolink-model/provided_by) property is now deprecated for edges in favor of the Biolink Model 2.0 defined [`knowledge_source`](https://biolink.github.io/biolink-model/knowledge_source) association slot or one of its descendents - [`aggregator_knowledge_source`](https://biolink.github.io/biolink-model/aggregator_knowledge_source), [`primary_knowledge_source`](https://biolink.github.io/biolink-model/primary_knowledge_source) and [`original_knowledge_source`](https://biolink.github.io/biolink-model/original_knowledge_source) - or the related association slot, [`supporting_data_source`](https://biolink.github.io/biolink-model/supporting_data_source).


#### Optional Edge Record Elements
Expand All @@ -115,7 +115,7 @@ Edge provenance, if specified, should be specified by one of a fixed set of elem

An edge can have additional properties, as defined in the Biolink Model.

For example, [category](https://biolink.github.io/biolink-model/docs/category) and [publications](https://biolink.github.io/biolink-model/docs/publications).
For example, [category](https://biolink.github.io/biolink-model/category) and [publications](https://biolink.github.io/biolink-model/publications).


##### Non-Biolink Model Elements
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