release-1.5.0

CHANGELOG.md

@@ -1,12 +1,19 @@
 # Changelog
 
+## 1.5.0 (2021-08-12)
+
+- Support mixins in ancestors hierarchy
+- Invalidate mixins as categories
+- Maintenance and bug fixes
+
 ## 1.4.0 (2021-07-15)
 
-- This version replaces the previously hard-coded `config.yaml` Biolink Model release number with use of the current Biolink Model Toolkit default model release value.
+- This version replaces the previously hard-coded `config.yaml` Biolink Model release number used in the included Biolink Model Toolkit.
 - Users of the KGX 'validate' functionality can also [reset the Biolink Model (SemVer) release number at the CLI, and programmatically, with the `Validator.set_biolink_model()` class method](./docs/reference/validator.md#biolink-model-versioning).
 - KGX made [Biolink Model 2.0++ aware with respect to new provenance slots - `knowledge_source` and  its descendant slot definitions](./docs/reference/transformer.md#provenance-of-nodes-and-edges). These slot properties need to be explicitly specified in the `Transformer.transform` **input_args** dictionary.
 - Some support for [heuristic auto-generation of candidate format-compliant CURIES Biolink Model 2.0++ Information Resource ("InfoRes") CURIES](./docs/reference/transformer.md#infores-identifier-rewriting). The new code also provides a regular expression and meta-data based rewrite of knowledge source names into such CURIES.
 - Some additional clarification in the 'readTheDocs' documentation including for 1.3.0 streaming release features.
+- Added tox testing and version support and refactored according to black and flake8 linting reports.
 
 ## 1.3.0 (2021-06-21)
 

Dockerfile

@@ -5,7 +5,7 @@ MAINTAINER  Deepak Unni "[email protected]"
 RUN git clone https://github.com/NCATS-Tangerine/kgx
 
 # Setup
-RUN cd kgx && git checkout tags/1.4.0 && pip install -r requirements.txt && python setup.py install
+RUN cd kgx && git checkout tags/1.5.0 && pip install -r requirements.txt && python setup.py install
 
 # Make data directory
 RUN mkdir data

docs/conf.py

@@ -90,9 +90,9 @@ def setup(app):
 # built documents.
 #
 # The short X.Y version.
-version = '1.4.0'
+version = '1.5.0'
 # The full version, including alpha/beta/rc tags.
-release = '1.4.0'
+release = '1.5.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

kgx/__init__.py

@@ -1 +1 @@
-__version__ = "1.4.0"
+__version__ = "1.5.0"

setup.py

@@ -6,7 +6,7 @@
 AUTHOR = 'Deepak Unni, Sierra Moxon, Richard Bruskiewich'
 EMAIL = '[email protected], [email protected], [email protected]'
 REQUIRES_PYTHON = '>=3.7.0'
-VERSION = '1.4.0'
+VERSION = '1.5.0'
 LICENSE = 'BSD'
 
 with open("requirements.txt", "r") as FH: