Display parameters for summary table

callbacks/coexpression/callbacks.py

@@ -229,6 +229,8 @@ def display_coexpression_submitted_input(coexpression_is_submitted, genes, netwo
         Output('coexpression-results-module-tabs-container', 'style'),
         Output('coexpression-module-stats', 'children'),
 
+        Output('summary-is-submitted', 'data'),
+
         State('homepage-submitted-genomic-intervals', 'data'),
 
         Input('coexpression-combined-genes', 'data'),
@@ -272,12 +274,12 @@ def perform_module_enrichment(genomic_intervals, combined_gene_ids, submitted_ad
                     first_module = enriched_modules[0]
                     module = first_module
                 else:
-                    return enriched_modules, first_module, {'display': 'none'}, stats
+                    return enriched_modules, first_module, {'display': 'none'}, stats, False
 
                 if module:
                     first_module = module
 
-                return enriched_modules, first_module, {'display': 'block'}, stats
+                return enriched_modules, first_module, {'display': 'block'}, stats, False
 
         raise PreventUpdate
 

callbacks/summary/callbacks.py

@@ -91,6 +91,26 @@ def submit_summary_input(summary_submitted_n_clicks, homepage_is_submitted,
 
         raise PreventUpdate
 
+    @app.callback(
+        Output('summary-results-container', 'style'),
+        Input('summary-is-submitted', 'data'),
+    )
+    def display_summary_output(summary_is_submitted):
+        if summary_is_submitted:
+            return {'display': 'block'}
+
+        else:
+            return {'display': 'none'}
+
+    # @app.callback(
+    #     Output('summary-submit', 'disabled'),
+
+    #     Input('summary-submit', 'n_clicks'),
+    #     Input('summary-results-table', 'data')
+    # )
+    # def disable_summary_button_upon_run(n_clicks,  *_):
+    #     return ctx.triggered_id == 'summary-submit' and n_clicks > 0
+
     @app.callback(
         Output('summary-converter-modal', 'is_open'),
         Input('summary-converter-tooltip', 'n_clicks'),
@@ -100,3 +120,102 @@ def open_modals(summary_converter_tooltip_n_clicks):
             return True
 
         raise PreventUpdate
+
+    @app.callback(
+        Output('summary-input', 'children'),
+
+        Input('summary-is-submitted', 'data'),
+        State('coexpression-is-submitted', 'data'),
+        State('summary-valid-addl-genes', 'data'),
+        State('coexpression-submitted-network', 'data'),
+        State('coexpression-submitted-clustering-algo', 'data'),
+        State('coexpression-submitted-parameter-slider', 'data')
+    )
+    def display_summary_submitted_input(summary_is_submitted, coexpression_is_submitted, addl_genes, network, algo, submitted_parameter_slider):
+        if coexpression_is_submitted:
+            parameters = 0
+            if submitted_parameter_slider and algo in submitted_parameter_slider:
+                parameters = submitted_parameter_slider[algo]['value']
+
+        else:
+            # Assume default coexpression network parameters
+            algo = 'clusterone'
+            network = 'OS-CX'
+            parameters = 30
+
+        if summary_is_submitted:
+            if not addl_genes:
+                addl_genes = 'None'
+            else:
+                addl_genes = '; '.join(set(addl_genes))
+
+            return [html.B('Additional Genes: '), addl_genes,
+                    html.Br(),
+                    html.B('Selected Co-Expression Network: '), coexpression_util.get_user_facing_network(
+                        network),
+                    html.Br(),
+                    html.B('Selected Module Detection Algorithm: '), coexpression_util.get_user_facing_algo(
+                        algo),
+                    html.Br(),
+                    html.B('Selected Algorithm Parameter: '), coexpression_util.get_user_facing_parameter(algo, parameters)]
+
+        raise PreventUpdate
+
+    # =================
+    # Table-related
+    # =================
+
+    # @app.callback(
+    #     Output('summary-results-table', 'data'),
+    #     Output('summary-results-table', 'columns'),
+
+    #     State('homepage-submitted-genomic-intervals', 'data'),
+
+    #     Input('summary-combined-genes', 'data'),
+    #     Input('summary-submitted-addl-genes', 'data'),
+
+    #     State('homepage-is-submitted', 'data'),
+    #     State('tfbs-is-submitted', 'data')
+    # )
+    # def display_enrichment_results(genomic_intervals, combined_genes, submitted_addl_genes,
+    #                                homepage_submitted, tfbs_is_submitted):
+    #     # if homepage_submitted and tfbs_is_submitted:
+
+    #     #     return enrichment_results_df.to_dict('records'), columns, stats
+
+    #     raise PreventUpdate
+
+    @app.callback(
+        Output('summary-results-table', 'filter_query', allow_duplicate=True),
+        Output('summary-results-table', 'page_current', allow_duplicate=True),
+
+        Input('summary-reset-table', 'n_clicks'),
+        prevent_initial_call=True
+    )
+    def reset_table_filter_page(*_):
+        return '', 0
+
+    # @app.callback(
+    #     Output('tfbs-download-df-to-csv', 'data'),
+    #     Input('tfbs-export-table', 'n_clicks'),
+    #     State('tfbs-results-table', 'data'),
+    #     State('homepage-submitted-genomic-intervals', 'data')
+    # )
+    # def download_tfbs_table_to_csv(download_n_clicks, tfbs_df, genomic_intervals):
+    #     if download_n_clicks >= 1:
+    #         df = pd.DataFrame(purge_html_export_table(tfbs_df))
+    #         return dcc.send_data_frame(df.to_csv, f'[{genomic_intervals}] Regulatory Feature Enrichment.csv', index=False)
+
+    #     raise PreventUpdate
+
+    # =================
+    # Session-related
+    # =================
+
+    # @app.callback(
+    #     Output('summary-addl-genes', 'value'),
+
+    #     State('tfbs-submitted-addl-genes', 'data')
+    # )
+    # def get_input_tfbs_session_state(addl_genes):
+    #     return addl_genes

callbacks/summary/util.py

@@ -0,0 +1,2 @@
+def get_liftover_summary():
+    pass

pages/analysis/summary.py

@@ -1,4 +1,4 @@
-from dash import html
+from dash import dash_table, dcc, html
 from callbacks.constants import Constants
 import dash_bootstrap_components as dbc
 
@@ -89,5 +89,65 @@
                        n_clicks=0,
                        className='page-button'),
         ], className='analysis-intro p-3'),
-    ]
+
+        html.Br(),
+
+        html.Div(
+            id='summary-results-container',
+            style={'display': 'none'},
+            children=[
+                dcc.Loading([
+                    html.Hr(className='mt-3 mb-3'),
+
+                    html.Br(),
+
+                    html.Div(
+                        id='summary-input',
+                        className='analysis-intro p-3',
+                    ),
+
+                    html.Br(),
+
+                    html.P(
+                        html.Div([
+                            html.P(
+                                'The table below summarizes the results of the different post-GWAS analyses.',
+                                className='text-start'
+                            ),
+
+                            dbc.Button([html.I(
+                                className='bi bi-download me-2'),
+                                'Export to CSV'],
+                                id='summary-export-table',
+                                n_clicks=0,
+                                color='light', size='sm', className='table-button'),
+                            dcc.Download(id='tfbs-download-df-to-csv'),
+                            dbc.Button([html.I(
+                                className='bi bi-arrow-clockwise me-2'),
+                                'Reset Table'],
+                                id='summary-reset-table',
+                                color='light', size='sm', className='ms-3 table-button')
+                        ], style={'textAlign': 'right'})
+                    ),
+
+                    html.Br(),
+
+                    dash_table.DataTable(
+                        id='summary-results-table',
+                        style_cell={
+                            'whiteSpace': 'pre-line'
+                        },
+                        markdown_options={'html': True},
+                        sort_action='native',
+                        filter_action='native',
+                        filter_options={'case': 'insensitive',
+                                        'placeholder_text': '🔎︎ Search Column'},
+                        page_action='native',
+                        page_size=15,
+                        cell_selectable=False,
+                        style_table={'overflowX': 'auto'}
+                    )
+                ])
+            ])
+    ], className='mt-2 mb-4'
 )