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Put gpu code into its own shared library. No need for pgi h5c++ wrapper anymore. #65

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Put gpu code into its own shared library. No need for pgi h5c++ wrapper anymore. #65

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Needs a fresh nvhpc installation, as the created scripts changed.

sfiligoi and others added 27 commits January 23, 2025 14:38
@sfiligoi
Add su::biom::load_n_samples and use in su.cpp
3c1b044
@sfiligoi
Remove unnecessary header includes
6838090
@sfiligoi
Expose the partial functions in libssu
1efade6
@sfiligoi
Make libssu trully thread-safe
897ce3e
@sfiligoi
Make ssu and faithpd use the shared library
817b7d7
@sfiligoi
Add missing header include
518c319
@sfiligoi
Use explicit object list in rapi_test dependency
b45d9dc
@sfiligoi
Export dl_read_partial and properly clean between rebuilds
1f65ef6
@sfiligoi
Use shared library in test_api. Deprecate merge_partial, since not us…
ef32989 
…e anywhere anymore
@sfiligoi
test_ska does not use the unifrac object files
f9a2aaf
@sfiligoi
Create an intermediate archive file to avoid dependencies for functio…
2d106e4 
…ns we do not use
@sfiligoi
Add API-based unifrac tests in test_su
a1a2c5b
@sfiligoi
Add API-based faithpd tests in test_su
b45a9c7
@sfiligoi
Add test_su_api to exercise the optimiza code paths (test_su exercize…
ddceeee 
… the cpu-only internals)
@sfiligoi
Handle NOGPU at top-level Makefile, so nv not required
e53236e
@sfiligoi
Add support for parallel make
ba82d84
@sfiligoi
Add clean_install make option
267d158
@sfiligoi
Fix test_su_api checks
7c9c6ac
@sfiligoi
Add cpu-only builds
a74e67c
@sfiligoi
Explicitly create all variants of unifrac_task_noclass
13f7026
@sfiligoi
Use internally a C API layer for the accelerated code
b1b1f69
@sfiligoi
Fix Makefile for acc
fc1c73d
@sfiligoi
Explicity use h5c++ for everything but acc code. Use CXX for acc code
df97366
@sfiligoi
Modularize ld loading in src/ssu_ld.c
aac7d13
@sfiligoi
Move handling of UNIFRAC_CPU_INFO into ssu_ld.c
bec652e
@sfiligoi
Put gpu code into its own shared library. No need for pgi h5c++ wrapp…
042ad3f 
…er anymore
@sfiligoi
Put gpu code into its own shared library. No need for pgi h5c++ wrapp…
5a0ce0c 
…er anymore - Fix typo
@sfiligoi sfiligoi marked this pull request as draft January 28, 2025 00:43
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