Bulk: UCSC updates

[aliciaaevans]

Updates from running the updated ucsc scripts (thanks @martin-g ): #50325

Also:

• Merged in changes from ci: Fix platform script echo #50389 and ucsc-bigwigsummary: update macOS build #50368 for OSX (Thanks @mencian) and bumped build number
• Updates to the script to fix a few formatting issues (curly brackets in the template, whitespace)
• Due to the issue with the additional platforms script, had to skip flye and sorted_nearest for osx-arm64 with build failure files. (They never actually built in their respective PRs.) Those need to be fixed in new PRs.

Note: PR checks will not succeed for this. Everything is already built and uploaded to the channel. I'll merge after approval.

[aliciaaevans]

oops, got to remove those extra files

[martin-g]

@aliciaaevans Did this recipe fail to build on linux-aarch64 ?
It was building fine before. I will re-test it in a new PR!

[aliciaaevans]

Here's the commit where I removed all the build failure files in favor of just removing the additional platform, if you want to look at the errors: 1ad838e but these all had a similar error. Maybe something changed in one of the dependencies since your original PR?

There are also a couple linux-64 with that same undefined reference to knet_init_alt error. https://github.com/bioconda/bioconda-recipes/blob/bulk/recipes/ucsc-hubcheck/build_failure.linux-64.yaml

[martin-g]

I tried by restoring some of the changes in include.patch and meta.yaml at #50407 but it still fails the same way....

[martin-g]

Same here

[martin-g]

Many thanks for finishing this task, @aliciaaevans !

I will check why the following recipes failed to build now on aarch64:

ucsc-genepredcheck
ucsc-genepredtobed
ucsc-genepredtobiggenepred
ucsc-genepredtogtf
ucsc-gff3togenepred
ucsc-gtftogenepred
ucsc-hggcpercent
ucsc-liftover

They were fine before!