[ci skip] add build failure record for recipe recipes/bioconductor-mirsm

bioconda · Jul 15, 2023 · bc7d6bf · bc7d6bf
1 parent d052584
commit bc7d6bf
Showing 1 changed file with 104 additions and 0 deletions.
diff --git a/recipes/bioconductor-mirsm/build_failure.linux-64.yaml b/recipes/bioconductor-mirsm/build_failure.linux-64.yaml
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+recipe_sha: f356e2a0c0aed966f5deb39a32cff50006c6fd3d93697234b95e30782c57992c  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |-
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-rcpp
+   - bioconductor-biobase >=2.60.0,<2.61.0
+   - bioconductor-fabia >=2.46.0,<2.47.0
+   - r-subspace
+   - r-s4vd
+   - bioconductor-org.hs.eg.db >=3.17.0,<3.18.0
+   - r-sombrero
+   - r-flashclust
+   - r-nmf
+   - r-mclust
+   - bioconductor-rqubic >=1.46.0,<1.47.0
+   - r-wgcna
+   - libgcc-ng >=12
+   - r-isa2
+   - r-pma
+   - r-igraph
+   - r-mcl
+   - r-biclust
+   - r-bibitr
+   - r-matrixcorrelation
+   - r-dbscan
+   - bioconductor-ibbig >=1.44.0,<1.45.0
+   - r-ppclust
+   - r-base 4.3.*
+   - r-gfa
+   - bioconductor-bicare >=1.58.0,<1.59.0
+   - r-dynamictreecut
+   - r-energy
+   - bioconductor-gseabase >=1.62.0,<1.63.0
+   - libblas 3.9.* *netlib
+   - r-linkcomm
+   - liblapack 3.9.* *netlib
+   - libstdcxx-ng >=12
+   - bioconductor-mirsponger >=2.4.0,<2.5.0
+   - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-bicare >=1.58.0,<1.59.0
+  -   - nothing provides requested bioconductor-mirsponger >=2.4.0,<2.5.0
+  -   - package r-sombrero-1.2_4-r35h6115d3f_0 requires r-base >=3.5,<3.6.0a0, but none of the providers can be installed
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("r-base[version='>=3.5,<3.6.0a0']"), MatchSpec("r-sombrero==1.2_4=r35h6115d3f_0"), MatchSpec("bioconductor-bicare[version='>=1.58.0,<1.59.0']"), MatchSpec("bioconductor-mirsponger[version='>=2.4.0,<2.5.0']")}
+# Last 100 lines of the build log.