update recipes for new pinnings

bioconda · Jun 4, 2024 · 4f0e98e · 4f0e98e
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diff --git a/recipes/abyss/meta.yaml b/recipes/abyss/meta.yaml
@@ -6,7 +6,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 1
+  number: 2
 
 source:
   url: https://github.com/bcgsc/abyss/releases/download/{{ version }}/abyss-{{ version }}.tar.gz

diff --git a/recipes/ac-diamond/meta.yaml b/recipes/ac-diamond/meta.yaml
@@ -7,7 +7,7 @@ source:
   sha256: f3ee403390c3de0a2f21f025a45b35c6131f4f39510c834fbe57ade28162c87b
 
 build:
-  number: 6
+  number: 7
   skip: True # [osx]
 
 requirements:

diff --git a/recipes/aeon/meta.yaml b/recipes/aeon/meta.yaml
@@ -11,7 +11,7 @@ source:
 
 build:
   skip: true  # [py < 39]
-  number: 2
+  number: 3
 
 requirements:
   build:

diff --git a/recipes/albatradis/meta.yaml b/recipes/albatradis/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: b637ed73b810e610b9da8eb8a9f7289b2e1b53f297bd4071dac9b8995d097a39
 
 build:
-  number: 4
+  number: 5
   skip: True  # [py<30 or osx]
   script: python -m pip install --ignore-installed .
 

diff --git a/recipes/aletsch/meta.yaml b/recipes/aletsch/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: "3537e90213baa7ea132b1648f4687780537999f3796711cf7398f9168d72f027"
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('aletsch', max_pin="x") }}
 

diff --git a/recipes/alfred/meta.yaml b/recipes/alfred/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 1
+  number: 2
   run_exports:
     - {{ pin_subpackage('alfred', max_pin="x.x") }}
 
@@ -44,4 +44,4 @@ about:
 
 extra:
   additional-platforms:
-    - linux-aarch64
+    - linux-aarch64
diff --git a/recipes/alignlib-lite/meta.yaml b/recipes/alignlib-lite/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 6
+  number: 7
   skip: True  # [py2k]
   script: python -m pip install --no-deps --ignore-installed .
 

diff --git a/recipes/amplisim/meta.yaml b/recipes/amplisim/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
   run_exports:
     - {{ pin_subpackage('amplisim', max_pin="x") }}

diff --git a/recipes/andi/meta.yaml b/recipes/andi/meta.yaml
@@ -5,7 +5,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage("andi", max_pin="x.x") }}
 

diff --git a/recipes/anise_basil/meta.yaml b/recipes/anise_basil/meta.yaml
@@ -18,7 +18,7 @@ source:
 
 build:
   skip: True  # [py27]
-  number: 7
+  number: 8
   run_exports:
     - {{ pin_subpackage("anise_basil", max_pin="x.x.x") }}  
 

diff --git a/recipes/arcs/meta.yaml b/recipes/arcs/meta.yaml
@@ -5,7 +5,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('arcs', max_pin="x") }}
 

diff --git a/recipes/ariba/meta.yaml b/recipes/ariba/meta.yaml
@@ -14,7 +14,7 @@ source:
     - ref_genes_getter.patch
 
 build:
-  number: 5
+  number: 6
   # Skipping py>=36 on osx because the bowtie2 <2.4.0 recipes are currently skipped on osx.
   skip: True  # [py<30 or (py>=36 and osx) or py > 39]
   script: python -m pip install --no-deps --ignore-installed .

diff --git a/recipes/arriba/meta.yaml b/recipes/arriba/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 3
 
 requirements:
   build:

diff --git a/recipes/artic-porechop/meta.yaml b/recipes/artic-porechop/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 5
+  number: 6
   skip: True  # [py27] 
   entry_points:
     - porechop = porechop.porechop:main

diff --git a/recipes/artic-tools/meta.yaml b/recipes/artic-tools/meta.yaml
@@ -27,7 +27,7 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 5
+  number: 6
 
 requirements:
   build:

diff --git a/recipes/atac/meta.yaml b/recipes/atac/meta.yaml
@@ -9,7 +9,7 @@ source:
   md5: e23ef1d41836b29332b70271b7c9eb74
 
 build:
-  number: 5
+  number: 6
   run_exports:
     - {{ pin_subpackage("atac", max_pin=None) }}  
 

diff --git a/recipes/ataqv/meta.yaml b/recipes/ataqv/meta.yaml
@@ -7,7 +7,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 3
 
 source:
   url: https://github.com/ParkerLab/ataqv/archive/{{ version }}.tar.gz

diff --git a/recipes/atropos/meta.yaml b/recipes/atropos/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 2
   # Ensure Cython is rerun by removing *.c output files and PKG-INFO (checked for by setup.py)
   script: find . "(" -name "*.c" -o -name PKG-INFO ")" -exec rm {} ";" && {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
   run_exports:
@@ -42,4 +42,4 @@ about:
 
 extra:
   additional-platforms:
-    - linux-aarch64
+    - linux-aarch64
diff --git a/recipes/augustus/3.3.3/meta.yaml b/recipes/augustus/3.3.3/meta.yaml
@@ -22,7 +22,7 @@ source:
     - patches/src.makefile.patch
 
 build:
-  number: 12
+  number: 13
 
 requirements:
   build:

diff --git a/recipes/augustus/meta.yaml b/recipes/augustus/meta.yaml
@@ -13,7 +13,7 @@ source:
     - patches/utrrnaseq.patch
 
 build:
-  number: 3
+  number: 4
 
 requirements:
   build:

diff --git a/recipes/bamread/meta.yaml b/recipes/bamread/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 913ae7d433592aa9bfad8699da93e74b5dfe8f567a1ebf4147f0da61baaf2b70
 
 build:
-  number: 1
+  number: 2
   skip: True  # [py < 37]
   script: python setup.py install --single-version-externally-managed --record=record.txt
 

diff --git a/recipes/bamscale/meta.yaml b/recipes/bamscale/meta.yaml
@@ -10,7 +10,7 @@ source:
     folder: bamscale
 
 build:
-  number: 8
+  number: 9
 
 requirements:
   build:

diff --git a/recipes/bandage_ng/meta.yaml b/recipes/bandage_ng/meta.yaml
@@ -10,7 +10,7 @@ source:
     sha256: 892c36350ee0eb8a58ec7187cf08b6b5b288915bd74f6d69e68c7aa2fdd704f0
 
 build:
-  number: 3
+  number: 4
   skip: True # [osx]
   run_exports:
     - {{ pin_subpackage("bandage_ng", max_pin=None) }}

diff --git a/recipes/bbknn/meta.yaml b/recipes/bbknn/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 1c01a9d6df2fc52a527de8a403617897a4b672724863299a7026f2132f1b041b 
 
 build:
-  number: 0
+  number: 1
   skip: true  # [py2k]
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
   run_exports:

diff --git a/recipes/bellmans-gapc/meta.yaml b/recipes/bellmans-gapc/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: 590b62d5fc39b1deb45855b0586d7ca3674ef17c59fc84ef445d2760a480f7ba
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('bellmans-gapc', max_pin=None) }}
 

diff --git a/recipes/biobloomtools/meta.yaml b/recipes/biobloomtools/meta.yaml
@@ -10,7 +10,7 @@ source:
 
 build:
   skip: true  # [osx or win]
-  number: 2
+  number: 3
 
 requirements:
   build:

diff --git a/recipes/bioconductor-cytoml/meta.yaml b/recipes/bioconductor-cytoml/meta.yaml
@@ -13,7 +13,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4b0060416cdeef7876cb9aaeb81dbaf7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-flowdensity/meta.yaml b/recipes/bioconductor-flowdensity/meta.yaml
@@ -13,7 +13,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 30c661d010484bff6c2eb427a7056aa1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-hyperdraw/meta.yaml b/recipes/bioconductor-hyperdraw/meta.yaml
@@ -13,7 +13,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2b1ec2cf9ea920a241f821baa08bb393
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-netpathminer/meta.yaml b/recipes/bioconductor-netpathminer/meta.yaml
@@ -13,7 +13,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 91cc0601961f682fcf1a2bed61eb6438
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/blockclust/meta.yaml b/recipes/blockclust/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 80ee2b32085b93966254083574b2bf3988771ffe28d73775be96a16cfda5579b
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx or py2k]
   run_exports:
     - {{ pin_subpackage('blockclust', max_pin="x") }}

diff --git a/recipes/boms/meta.yaml b/recipes/boms/meta.yaml
@@ -14,7 +14,7 @@ build:
     - {{ pin_subpackage('boms', max_pin="x.x") }}
   skip: true  # [osx or py<39]
   script: {{ PYTHON }} -m pip install . -vv --no-build-isolation
-  number: 0
+  number: 1
 
 requirements:
   build:

diff --git a/recipes/bowtie/meta.yaml b/recipes/bowtie/meta.yaml
@@ -13,7 +13,7 @@ source:
 
 build:
   skip: True  # [py<30]
-  number: 7
+  number: 8
   run_exports:
     - {{ pin_subpackage("bowtie", max_pin="x.x") }}
 

diff --git a/recipes/bracken/meta.yaml b/recipes/bracken/meta.yaml
@@ -14,7 +14,7 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('bracken', max_pin="x") }}
 

diff --git a/recipes/bte/meta.yaml b/recipes/bte/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 3
   skip: true  # [py < 38]
 
 requirements:

diff --git a/recipes/btllib/meta.yaml b/recipes/btllib/meta.yaml
@@ -11,7 +11,7 @@ source:
 
 build:
   skip: True  # [py < 38 or win]
-  number: 1
+  number: 2
   run_exports:
     - {{ pin_subpackage('btllib', max_pin="x") }}
 

diff --git a/recipes/bustools/meta.yaml b/recipes/bustools/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: ad5816152644ee615316daecf5883183994bd7cc96e6c008439123f4cd750b1f
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('bustools', max_pin="x.x") }}
 

diff --git a/recipes/bwapy/meta.yaml b/recipes/bwapy/meta.yaml
@@ -10,7 +10,7 @@ source:
     folder: bwa
 
 build:
-  number: 7
+  number: 8
   skip: True  # [py<30]
 
 requirements:

diff --git a/recipes/bwread/meta.yaml b/recipes/bwread/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: a6f524baf85a8c10c0de8e1d5874467816a32dccaa7b9f2b571c99ed6c449b16
 
 build:
-  number: 1
+  number: 2
   skip: True  # [py27]
   script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
 

diff --git a/recipes/cage/meta.yaml b/recipes/cage/meta.yaml
@@ -7,7 +7,7 @@ source:
   sha256: 135abb4c769f8668e56e1f7c82bf98c68eccc3b387cd3b99baf18d851bd93d96
 
 build:
-  number: 6
+  number: 7
   skip: True  # [osx]
 
 requirements:

diff --git a/recipes/cancerit-allelecount/meta.yaml b/recipes/cancerit-allelecount/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: 5363ae12c2385c962728336a4498b1a29c9eaa3d4a24492d0debf897771cfd3c
 
 build:
-  number: 5
+  number: 6
   skip: True # [osx]
 
 requirements:

diff --git a/recipes/cansam/meta.yaml b/recipes/cansam/meta.yaml
@@ -7,7 +7,7 @@ source:
   md5: 017d2ebc7338be995af3b9e6056f5fe0
 
 build:
-  number: 7
+  number: 8
 
 requirements:
   build: