[ci run] bulk

bioconda · Jul 17, 2023 · 37c0671 · 37c0671
1 parent f83c9fa
commit 37c0671
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Showing 7 changed files with 13 additions and 10 deletions.
diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -1,3 +1,6 @@
+# Currently kills bulk
+recipes/bioconductor-missmethyl
+
 # Needs r-xgboost migration
 recipes/bioconductor-bambu
 recipes/bioconductor-bayesspace
@@ -10,6 +13,7 @@ recipes/bioconductor-scate
 recipes/bioconductor-scdblfinder
 recipes/bioconductor-scds
 recipes/bioconductor-trena
+recipes/bioconductor-flames
 
 # speed up bulk
 recipes/bioconductor-minfi

diff --git a/recipes/bioconductor-data-packages/dataURLs.json b/recipes/bioconductor-data-packages/dataURLs.json
diff --git a/recipes/bioconductor-data-packages/meta.yaml b/recipes/bioconductor-data-packages/meta.yaml
@@ -3,7 +3,7 @@ package:
   version: '20230717'
 source:
 build:
-  number: 0
+  number: 1
   noarch: generic
 requirements:
   run:

diff --git a/recipes/bioconductor-methylclockdata/meta.yaml b/recipes/bioconductor-methylclockdata/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.8.0" %}
+{% set version = "1.8.1" %}
 {% set name = "methylclockData" %}
 {% set bioc = "3.17" %}
 
@@ -11,14 +11,14 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 52774d13964d22556fdceb4458caaa27
+  md5: c211da6ed8d39ba8cee6d4d630691bad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
   noarch: generic
-# Suggests: knitr, rmarkdown
+# Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
     - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
@@ -29,7 +29,7 @@ requirements:
     - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages>=20230717
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-methylclockdata/post-link.sh b/recipes/bioconductor-methylclockdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "methylclockdata-1.8.0"
+installBiocDataPackage.sh "methylclockdata-1.8.1"
diff --git a/recipes/bioconductor-wppi/meta.yaml b/recipes/bioconductor-wppi/meta.yaml
@@ -50,8 +50,7 @@ requirements:
     - r-tidyr
 test:
   commands:
-    - '$R -e "library(''{{ name }}'')"'
-    - find /tmp -name omnipathr-log -exec rm -rf {} + || true
+    - $R -e "options(omnipath.logfile=''none''); library(''{{ name }}'')" && find /tmp -name omnipathr-log -exec rm -rf {} + || true
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'MIT + file LICENSE'

diff --git a/recipes/meryl/meta.yaml b/recipes/meryl/meta.yaml
@@ -14,7 +14,7 @@ source:
     - 0002-macos-cmath.patch  # [osx]
 
 build:
-  number: 0
+  number: 1
 
 requirements:
   build: