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remove all ucsc from skiplist
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aliciaaevans committed Aug 27, 2024
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Expand Up @@ -632,10 +632,6 @@ recipes/tedna
recipes/transtermhp
recipes/carna

# stringify can't find libmysqlclient.18
recipes/ucsc-overlapselect
recipes/ucsc-pslmap

# Source seems to have moved
recipes/discovar

Expand Down Expand Up @@ -760,202 +756,6 @@ recipes/maker
# Takes hours to solve the environment
recipes/rop

# Need to redo the skeletons for these
recipes/ucsc-axttomaf
recipes/ucsc-bamtopsl
recipes/ucsc-bedcoverage
recipes/ucsc-bedextendranges
recipes/ucsc-bedintersect
recipes/ucsc-beditemoverlapcount
recipes/ucsc-bedjointaboffset
recipes/ucsc-bedpileups
recipes/ucsc-bedrestricttopositions
recipes/ucsc-bedtopsl
recipes/ucsc-bedweedoverlapping
recipes/ucsc-blasttopsl
recipes/ucsc-catdir
recipes/ucsc-catuncomment
recipes/ucsc-chainbridge
recipes/ucsc-chainfilter
recipes/ucsc-chainnet
recipes/ucsc-chainprenet
recipes/ucsc-chainsplit
recipes/ucsc-chainstitchid
recipes/ucsc-chainswap
recipes/ucsc-chaintoaxt
recipes/ucsc-chaintopsl
recipes/ucsc-chaintopslbasic
recipes/ucsc-checkagpandfa
recipes/ucsc-checkcoveragegaps
recipes/ucsc-checkhgfindspec
recipes/ucsc-checktablecoords
recipes/ucsc-chopfalines
recipes/ucsc-chromgraphfrombin
recipes/ucsc-chromgraphtobin
recipes/ucsc-clustergenes
recipes/ucsc-coltransform
recipes/ucsc-countchars
recipes/ucsc-crtreeindexbed
recipes/ucsc-crtreesearchbed
recipes/ucsc-dbsnoop
recipes/ucsc-dbtrash
recipes/ucsc-endsinlf
recipes/ucsc-estorient
recipes/ucsc-expmatrixtobarchartbed
recipes/ucsc-faalign
recipes/ucsc-facmp
recipes/ucsc-facount
recipes/ucsc-fafilter
recipes/ucsc-fafiltern
recipes/ucsc-fafrag
recipes/ucsc-fanoise
recipes/ucsc-faonerecord
recipes/ucsc-fapolyasizes
recipes/ucsc-farandomize
recipes/ucsc-farc
recipes/ucsc-fasize
recipes/ucsc-fasplit
recipes/ucsc-fastqstatsandsubsample
recipes/ucsc-fastqtofa
recipes/ucsc-fatofastq
recipes/ucsc-fatotab
recipes/ucsc-fatrans
recipes/ucsc-featurebits
recipes/ucsc-findmotif
recipes/ucsc-gaptolift
recipes/ucsc-genepredfilter
recipes/ucsc-genepredhisto
recipes/ucsc-genepredsinglecover
recipes/ucsc-genepredtofakepsl
recipes/ucsc-genepredtomafframes
recipes/ucsc-genepredtoprot
recipes/ucsc-gensub2
recipes/ucsc-getrna
recipes/ucsc-getrnapred
recipes/ucsc-gff3topsl
recipes/ucsc-gmtime
recipes/ucsc-headrest
recipes/ucsc-hgbbidblink
recipes/ucsc-hgfakeagp
recipes/ucsc-hgfindspec
recipes/ucsc-hggoldgapgl
recipes/ucsc-hgloadbed
recipes/ucsc-hgloadchain
recipes/ucsc-hgloadmaf
recipes/ucsc-hgloadnet
recipes/ucsc-hgloadout
recipes/ucsc-hgloadoutjoined
recipes/ucsc-hgloadsqltab
recipes/ucsc-hgloadwiggle
recipes/ucsc-hgspeciesrna
recipes/ucsc-hgsqldump
recipes/ucsc-hgtrackdb
recipes/ucsc-hgvstovcf
recipes/ucsc-htmlcheck
recipes/ucsc-hubcheck
recipes/ucsc-hubpubliccheck
recipes/ucsc-lavtoaxt
recipes/ucsc-lavtopsl
recipes/ucsc-ldhggene
recipes/ucsc-liftup
recipes/ucsc-linestora
recipes/ucsc-localtime
recipes/ucsc-mafaddirows
recipes/ucsc-mafaddqrows
recipes/ucsc-mafcoverage
recipes/ucsc-maffetch
recipes/ucsc-maffilter
recipes/ucsc-maffrag
recipes/ucsc-maffrags
recipes/ucsc-mafgene
recipes/ucsc-mafmefirst
recipes/ucsc-maforder
recipes/ucsc-mafranges
recipes/ucsc-mafsinregion
recipes/ucsc-mafspecieslist
recipes/ucsc-mafspeciessubset
recipes/ucsc-mafsplit
recipes/ucsc-mafsplitpos
recipes/ucsc-maftoaxt
recipes/ucsc-maftobigmaf
recipes/ucsc-maftopsl
recipes/ucsc-maftosnpbed
recipes/ucsc-maketablelist
recipes/ucsc-maskoutfa
recipes/ucsc-mktime
recipes/ucsc-mrnatogene
recipes/ucsc-netchainsubset
recipes/ucsc-netclass
recipes/ucsc-netfilter
recipes/ucsc-netsplit
recipes/ucsc-netsyntenic
recipes/ucsc-nettoaxt
recipes/ucsc-nettobed
recipes/ucsc-newprog
recipes/ucsc-newpythonprog
recipes/ucsc-nibsize
recipes/ucsc-overlapselect
recipes/ucsc-para
recipes/ucsc-parafetch
recipes/ucsc-parahub
recipes/ucsc-parahubstop
recipes/ucsc-paranode
recipes/ucsc-paranodestart
recipes/ucsc-paranodestatus
recipes/ucsc-paranodestop
recipes/ucsc-parasol
recipes/ucsc-parasync
recipes/ucsc-paratestjob
recipes/ucsc-positionaltblcheck
recipes/ucsc-pslcat
recipes/ucsc-pslcheck
recipes/ucsc-psldropoverlap
recipes/ucsc-pslfilter
recipes/ucsc-pslliftsubrangeblat
recipes/ucsc-pslmap
recipes/ucsc-pslmappostchain
recipes/ucsc-pslpartition
recipes/ucsc-pslpretty
recipes/ucsc-pslrc
recipes/ucsc-pslreps
recipes/ucsc-pslscore
recipes/ucsc-pslselect
recipes/ucsc-pslsomerecords
recipes/ucsc-pslstats
recipes/ucsc-pslswap
recipes/ucsc-psltobigpsl
recipes/ucsc-psltopslx
recipes/ucsc-pslxtofa
recipes/ucsc-qacagplift
recipes/ucsc-qactoqa
recipes/ucsc-qatoqac
recipes/ucsc-randomlines
recipes/ucsc-rasqlquery
recipes/ucsc-ratolines
recipes/ucsc-ratotab
recipes/ucsc-rmfadups
recipes/ucsc-rowstocols
recipes/ucsc-spacedtotab
recipes/ucsc-splitfile
recipes/ucsc-splitfilebycolumn
recipes/ucsc-sqltoxml
recipes/ucsc-subcolumn
recipes/ucsc-taillines
recipes/ucsc-tdbquery
recipes/ucsc-texthistogram
recipes/ucsc-ticktodate
recipes/ucsc-toupper
recipes/ucsc-transmappsltogenepred
recipes/ucsc-trfbig
recipes/ucsc-twobitdup
recipes/ucsc-twobitmask
recipes/ucsc-validatefiles
recipes/ucsc-validatemanifest
recipes/ucsc-websync
recipes/ucsc-wigcorrelate
recipes/ucsc-wordline
recipes/ucsc-xmltosql

# Above v1.0.5 there are licensing restrictions and it cannot be distributed
# via bioconda. See https://github.com/bioconda/bioconda-recipes/pull/23476.
recipes/fishtaco
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