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fzohrasmaili authored Apr 30, 2018
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# Onto2Vec
## UPDATE
An improved version of our method is available at : https://github.com/bio-ontology-research-group/opa2vec/
## Introduction
Onto2Vec is a program that can be used to produce feature vectors for biological entities based on their annotations to biomedical ontologies. Onto2Vec uses the integrity of the axioms describing the structure of an ontology as well as the entity-concept annotation axioms.
This is a detailed documentation on how to use Onto2Vec to produce ontology-based feature vectors. The Onto2Vec implementation shared here uses GO ontology as a case study and can be directly used to produce feature vectors for GO functions and proteins. However, Onto2Vec can also be used to produce feature vectors for entities using any other biomedical ontology. We provide here instructions on how to use Onto2Vec with the ontology of your choice.
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