Skip to content

Commit

Permalink
Merge branch 'develop' of https://github.com/NOAA-EMC/DATM-MOM6-CICE5 …
Browse files Browse the repository at this point in the history 
…into develop
  • Loading branch information
@binli2337
binli2337 committed Sep 22, 2020
2 parents d993386 + ca3d21b commit cf827aa
Show file tree
Hide file tree
Showing 24 changed files with 8,161 additions and 1,605 deletions.
780 changes: 780 additions & 0 deletions parm/MOM_input_template100
View file

Large diffs are not rendered by default.

256 changes: 256 additions & 0 deletions parm/comp_ice.backend_025
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,256 @@
#! /bin/csh -f

### Expect to find the following environment variables set on entry:
# SITE
# SYSTEM_USERDIR
# SRCDIR
# EXEDIR

### Grid resolution
#setenv RES col ; setenv GRID 5x5
#setenv RES gx3 ; setenv GRID 100x116
#setenv RES nx1 ; setenv GRID 360x200
#setenv RES gx1 ; setenv GRID 320x384
#setenv RES tx1 ; setenv GRID 360x240
#setenv RES mx5 ; setenv GRID 720x410
#setenv RES mx2 ; setenv GRID 1500x1099
#setenv RES mx1 ; setenv GRID 360x320

setenv RES mx025
setenv NEMS_GRID T126_mx025
#setenv NEMS_GRID mx1
echo "NEMS_GRID = $NEMS_GRID "
if ($?NEMS_GRID) then
if ($NEMS_GRID =~ *col*) setenv RES col
if ($NEMS_GRID =~ *gx3*) setenv RES gx3
if ($NEMS_GRID =~ *nx1*) setenv RES nx1
if ($NEMS_GRID =~ *gx1*) setenv RES gx1
if ($NEMS_GRID =~ *tx1*) setenv RES tx1
if ($NEMS_GRID =~ *mx5*) setenv RES mx5
if ($NEMS_GRID =~ *mx025*) setenv RES mx025
if ($NEMS_GRID =~ *mx2*) setenv RES mx2
if ($NEMS_GRID =~ *mx1*) setenv RES mx1
endif

if ($RES == col) setenv GRID 5x5
if ($RES == gx3) setenv GRID 100x116
if ($RES == nx1) setenv GRID 360x200
if ($RES == gx1) setenv GRID 320x384
if ($RES == tx1) setenv GRID 360x240
if ($RES == mx5) setenv GRID 720x410
if ($RES == mx025) setenv GRID 1440x1080
if ($RES == mx2) setenv GRID 1500x1099
if ($RES == mx1) setenv GRID 360x320

echo "tcx comp_ice.backend res grid $RES $GRID"

set NXGLOB = `echo $GRID | sed s/x.\*//`
set NYGLOB = `echo $GRID | sed s/.\*x//`

# Recommendations:
# NTASK equals nprocs in ice_in
# use processor_shape = slenderX1 or slenderX2 in ice_in
# one per processor with distribution_type='cartesian' or
# squarish blocks with distribution_type='rake'
# If BLCKX (BLCKY) does not divide NXGLOB (NYGLOB) evenly, padding
# will be used on the right (top) of the grid.
if ($RES == 'col') then # for column configuration:
setenv NTASK 1 # total number of processors
setenv BLCKX 5 # x-dimension of blocks ( not including )
setenv BLCKY 5 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'gx3') then # for column configuration:
setenv NTASK 4 # total number of processors
setenv BLCKX 50 # x-dimension of blocks ( not including )
setenv BLCKY 58 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'nx1') then # for column configuration:
setenv NTASK 4 # total number of processors
setenv BLCKX 180 # x-dimension of blocks ( not including )
setenv BLCKY 100 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'mx5') then # for column configuration:
setenv NTASK 20 # total number of processors
setenv BLCKX 72 # x-dimension of blocks ( not including )
setenv BLCKY 205 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'mx025') then # for column configuration:
# setenv NTASK 120 # total number of processors
# setenv BLCKX 24 # x-dimension of blocks ( not including )
## setenv NTASK 24 # total number of processors
## setenv BLCKX 120 # x-dimension of blocks ( not including )
setenv NTASK 48 # total number of processors
setenv BLCKX 60 # x-dimension of blocks ( not including )
setenv BLCKY 540 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'mx2') then # for column configuration:
setenv NTASK 24 # total number of processors
setenv BLCKX 125 # x-dimension of blocks ( not including )
setenv BLCKY 550 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif
if ($RES == 'mx1') then # for column configuration:
setenv NTASK 24 # total number of processors
setenv BLCKX 30 # x-dimension of blocks ( not including )
setenv BLCKY 160 # y-dimension of blocks ( ghost cells )
setenv NICELYR 7 # number of vertical layers in the ice
setenv NSNWLYR 1 # number of vertical layers in the snow
setenv NICECAT 5 # number of ice thickness categories
endif

# may need to increase MXBLCKS with rake distribution or padding
@ a = $NXGLOB * $NYGLOB ; @ b = $BLCKX * $BLCKY * $NTASK
@ m = $a / $b ; setenv MXBLCKS $m; if ($MXBLCKS == 0) setenv MXBLCKS 1
#setenv MXBLCKS 37 # if necessary (code will print proper value)
setenv MXBLCKS 1
### Tracers # match ice_in tracer_nml to conserve memory
setenv TRAGE 1 # set to 1 for ice age tracer
setenv TRFY 1 # set to 1 for first-year ice area tracer
setenv TRLVL 1 # set to 1 for level and deformed ice tracers
setenv TRPND 1 # set to 1 for melt pond tracers
setenv NTRAERO 0 # number of aerosol tracers
# (up to max_aero in ice_domain_size.F90)
# CESM uses 3 aerosol tracers
setenv TRBRI 0 # set to 1 for brine height tracer
setenv NBGCLYR 7 # number of zbgc layers
setenv TRBGCS 0 # number of skeletal layer bgc tracers
# TRBGCS=0 or 2<=TRBGCS<=9)

### Specialty code
setenv CAM_ICE no # set to yes for CAM runs (single column)
setenv SHRDIR csm_share # location of CCSM shared code

if !($?IO_TYPE) then
setenv IO_TYPE netcdf4 # set to none if netcdf library is unavailable
# setenv IO_TYPE netcdf3 # set to none if netcdf library is unavailable
# setenv IO_TYPE pio # set to pio for parallel netcdf
endif

setenv DITTO no # reproducible diagnostics
setenv THRD no # set to yes for OpenMP threading

if ( $THRD == 'yes') setenv OMP_NUM_THREADS 2 # positive integer

### File unit numbers
setenv NUMIN 11 # minimum file unit number
setenv NUMAX 99 # maximum file unit number

if !(-d $EXEDIR) mkdir -p $EXEDIR
setenv CBLD $SRCDIR/bld
setenv OBJDIR $EXEDIR/compile ; if !(-d $OBJDIR) mkdir -p $OBJDIR
setenv RSTDIR $EXEDIR/restart ; if !(-d $RSTDIR) mkdir -p $RSTDIR
setenv HSTDIR $EXEDIR/history ; if !(-d $HSTDIR) mkdir -p $HSTDIR

setenv ARCH `uname -s`
if ( $ARCH == 'UNICOS/mp') setenv ARCH UNICOS
if ( $ARCH == 'UNICOS') then
cp -f $CBLD/Makefile.$ARCH $CBLD/Makefile
else if ( $ARCH == 'Darwin' ) then
cp -f $CBLD/Makefile.$ARCH $CBLD/Makefile
else
cp -f $CBLD/Makefile.std $CBLD/Makefile
endif
setenv ARCH $ARCH.$SITE

cd $SRCDIR/source

cd $EXEDIR

#if !($RES == 'col') then
#if !(-e grid) cp $SRCDIR/input_templates/$RES/global_$RES.grid grid
#if !(-e kmt) cp $SRCDIR/input_templates/$RES/global_$RES.kmt kmt
#endif
#if !(-e ice_in) cp $SRCDIR/input_templates/$RES/ice_in .
#if !(-e run_ice) cp $SRCDIR/input_templates/run_ice.$ARCH run_ice

cd $RSTDIR

#cp $SRCDIR/input_templates/$RES/iced_$RES* .
#if !(-e ice.restart_file) cp $SRCDIR/input_templates/$RES/ice.restart_file .

cd $OBJDIR

if ($NTASK == 1) then
setenv COMMDIR serial
else
setenv COMMDIR mpi
endif

setenv DRVDIR cice
if ($IO_TYPE == 'netcdf3' || $IO_TYPE == 'netcdf4') then
setenv IODIR io_netcdf
else if ($IO_TYPE == 'pio') then
setenv IODIR io_pio
else
setenv IODIR io_binary
endif

### List of source code directories (in order of importance).
cat >! Filepath << EOF
$SRCDIR/drivers/$DRVDIR
$SRCDIR/source
$SRCDIR/$COMMDIR
$SRCDIR/$IODIR
$SRCDIR/$SHRDIR
EOF

echo "ARCH is $ARCH"
if ( $ARCH == 'Linux.NEMS.wcoss_cray') then
icc -o makdep $CBLD/makdep.c
else
cc -o makdep $CBLD/makdep.c
endif

# Build in debug mode. If DEBUG=Y, enable DEBUG compilation. This
# flag is set in ${ROOTDIR}/coupledFV3_MOM6_CICE_debug.appBuilder file.
if (! $?DEBUG) then
set DEBUG = N
else
if ($DEBUG != "Y") then
set DEBUG = N
endif
endif
echo "CICE comp_ice.backend ... DEBUG=${DEBUG}"

gmake VPFILE=Filepath EXEC=$EXEDIR/cice \
NXGLOB=$NXGLOB NYGLOB=$NYGLOB \
BLCKX=$BLCKX BLCKY=$BLCKY MXBLCKS=$MXBLCKS \
DEBUG=$DEBUG \
-f $CBLD/Makefile MACFILE=$CBLD/Macros.$ARCH

cd ..
pwd
echo NTASK = $NTASK
echo "global N, block_size"
echo "x $NXGLOB, $BLCKX"
echo "y $NYGLOB, $BLCKY"
echo max_blocks = $MXBLCKS
echo $TRAGE = TRAGE, iage tracer
echo $TRFY = TRFY, first-year ice tracer
echo $TRLVL = TRLVL, level-ice tracers
echo $TRPND = TRPND, melt pond tracers
echo $NTRAERO = NTRAERO, number of aerosol tracers
echo $TRBRI = TRBRI, brine height tracer
echo $NBGCLYR = NBGCLYR, number of bio grid layers
echo $TRBGCS = TRBGCS, number of BGC tracers

cd $EXEDIR/compile

ar -r $EXEDIR/liblanl_cice.a CICE_FinalMod.o CICE_InitMod.o CICE_RunMod.o ice_aerosol.o ice_age.o ice_algae.o ice_atmo.o ice_blocks.o ice_boundary.o ice_brine.o ice_broadcast.o ice_calendar.o ice_communicate.o ice_constants.o ice_diagnostics.o ice_distribution.o ice_domain.o ice_domain_size.o ice_dyn_eap.o ice_dyn_evp.o ice_dyn_shared.o ice_exit.o ice_fileunits.o ice_firstyear.o ice_flux.o ice_forcing.o ice_gather_scatter.o ice_global_reductions.o ice_grid.o ice_history.o ice_history_bgc.o ice_history_drag.o ice_history_mechred.o ice_history_pond.o ice_history_shared.o ice_history_write.o ice_init.o ice_itd.o ice_kinds_mod.o ice_lvl.o ice_mechred.o ice_meltpond_cesm.o ice_meltpond_lvl.o ice_meltpond_topo.o ice_ocean.o ice_orbital.o ice_read_write.o ice_restart.o ice_restart_driver.o ice_restart_shared.o ice_restoring.o ice_shortwave.o ice_spacecurve.o ice_state.o ice_step_mod.o ice_therm_0layer.o ice_therm_bl99.o ice_therm_itd.o ice_therm_mushy.o ice_therm_shared.o ice_therm_vertical.o ice_timers.o ice_transport_driver.o ice_transport_remap.o ice_zbgc.o ice_zbgc_shared.o shr_orb_mod.o
Loading

0 comments on commit cf827aa

Please sign in to comment.