Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

updates to SHAP code #6

Open
wants to merge 9 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file modified .DS_Store
Binary file not shown.
10 changes: 0 additions & 10 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -22,16 +22,6 @@ To ease the configuation, please install Anaconda and set this up in a virtual e

https://www.anaconda.com/products/individual

2. Create the environment:

```conda env create -f .\conda-env.yml```

3. Acticate the environment:

```conda activate frollo-py-pipeline-env```

Then on Windows, run ```startlocal_woDocker.bat``` and on Linux, run ```startlocal_woDocker.sh```


## Codebase Structure

Expand Down
Binary file modified UKB ML flow-Page-2.drawio.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added code_projects/.DS_Store
Binary file not shown.
993 changes: 993 additions & 0 deletions code_projects/ad/ADModels.ipynb

Large diffs are not rendered by default.

7,166 changes: 7,166 additions & 0 deletions code_projects/ad/Barplots.ipynb

Large diffs are not rendered by default.

Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
993 changes: 993 additions & 0 deletions code_projects/ad/Untitled.ipynb

Large diffs are not rendered by default.

739 changes: 739 additions & 0 deletions code_projects/ad/data_processing.ipynb

Large diffs are not rendered by default.

Binary file added code_projects/ad/exercise_2022-05-26.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added code_projects/ad/feats_all_adrun27110parquet
Binary file not shown.
Binary file added code_projects/ad/feats_apoe4negrun27110parquet
Binary file not shown.
Binary file added code_projects/ad/feats_apoe4posrun27110parquet
Binary file not shown.
1,950 changes: 1,950 additions & 0 deletions code_projects/ad/ml_part_1.ipynb

Large diffs are not rendered by default.

37,278 changes: 37,278 additions & 0 deletions code_projects/ad/ml_part_2.ipynb

Large diffs are not rendered by default.

Binary file added code_projects/ad/test.pkl2022-05-25.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
1,059 changes: 1,059 additions & 0 deletions code_projects/dementia/6. Analysis.ipynb

Large diffs are not rendered by default.

6,056 changes: 6,056 additions & 0 deletions code_projects/dementia/Dementia ML.ipynb

Large diffs are not rendered by default.

909 changes: 909 additions & 0 deletions code_projects/dementia/Figure3Creation.ipynb

Large diffs are not rendered by default.

3,106 changes: 3,106 additions & 0 deletions code_projects/dementia/Slopes_analysis.ipynb

Large diffs are not rendered by default.

4,697 changes: 4,697 additions & 0 deletions code_projects/dementia/analysis.ipynb

Large diffs are not rendered by default.

Binary file added code_projects/dpn/.DS_Store
Binary file not shown.
993 changes: 993 additions & 0 deletions code_projects/dpn/Diabetes_clean.ipynb

Large diffs are not rendered by default.

Loading