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Rerun STAR if sample_info stranded filed is changed #28

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Rerun STAR if sample_info stranded filed is changed #28

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3 changes: 2 additions & 1 deletion mapping_pipeline.snake
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Original file line number Diff line number Diff line change
Expand Up @@ -287,7 +287,8 @@ rule star:
params:
outdir = pph.out_dir_name(step="star"),
options = config["rule_options"]["star"]["cmd_opt"],
trim = True if config["rule_options"]["star"]["trim"]=="yes" else False
trim = True if config["rule_options"]["star"]["trim"]=="yes" else False,
count_col = lambda wildcards: {"unstranded":2, "forward":3, "reverse":4}[config["sample_info"][wildcards.sample]["stranded"]]
threads: 16
resources:
mem_mb=48000,
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