[automated] Update pipeline configs

bihealth · Jan 31, 2025 · e54ca35 · e54ca35
1 parent 40454fb
commit e54ca35
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Showing 17 changed files with 204 additions and 0 deletions.
diff --git a/pipeline/deepmodeloptim.config b/pipeline/deepmodeloptim.config
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+/*
+* -------------------------------------------------
+*  nfcore/deepmodeloptim custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/deepmodeloptim folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/denovotranscript.config b/pipeline/denovotranscript.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/denovotranscript custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/denovotranscript folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/drugresponseeval.config b/pipeline/drugresponseeval.config
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+/*
+* -------------------------------------------------
+*  nfcore/drugresponseeval custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/drugresponseeval folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/evexplorer.config b/pipeline/evexplorer.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/evexplorer custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/evexplorer folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/fastqrepair.config b/pipeline/fastqrepair.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/fastqrepair custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/fastqrepair folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/genomeqc.config b/pipeline/genomeqc.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/genomeqc custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/genomeqc folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/kmermaid.config b/pipeline/kmermaid.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/kmermaid custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/kmermaid folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/methylarray.config b/pipeline/methylarray.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/methylarray custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/methylarray folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/methylong.config b/pipeline/methylong.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/methylong custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/methylong folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/pacvar.config b/pipeline/pacvar.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/pacvar custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/pacvar folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/pairgenomealign.config b/pipeline/pairgenomealign.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/pairgenomealign custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/pairgenomealign folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/proteinfamilies.config b/pipeline/proteinfamilies.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/proteinfamilies custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/proteinfamilies folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/scdownstream.config b/pipeline/scdownstream.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/scdownstream custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/scdownstream folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/spatialxe.config b/pipeline/spatialxe.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/spatialxe custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/spatialxe folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/stableexpression.config b/pipeline/stableexpression.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/stableexpression custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/stableexpression folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/troughgraph.config b/pipeline/troughgraph.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/troughgraph custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/troughgraph folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}
diff --git a/pipeline/tumourevo.config b/pipeline/tumourevo.config
@@ -0,0 +1,12 @@
+/*
+* -------------------------------------------------
+*  nfcore/tumourevo custom profile Nextflow config file
+* -------------------------------------------------
+* Config options for custom environments.
+* Cluster-specific config options should be saved
+* in the conf/pipeline/tumourevo folder and imported
+* under a profile name here.
+*/
+
+profiles {
+}