Unattended config setup for iRODS #1
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| @@ -23,52 +51,41 @@ RUN yum install -y epel-release && \ | |||
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| # Install dependency packages | |||
| RUN yum install -y \ | |||
| postgresql12 \ | |||
| sudo | |||
| postgresql11 \ | |||
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Because sodar-docker-compose uses 11 for postgres. Just went with the same version to maintain consistency. Can update both of course.
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Good point. I'd say we should start out with the latest stable version.
https://www.postgresql.org/support/versioning/
VarFish uses 12. But maybe for SODAR/iRODS we should go for 14.
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Also related to this: bihealth/sodar-docker-compose#1
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Are there some killer features iRODS specifically needs from the later Postgres versions?
| if [ -f /irods_python-re_installer.py ]; then | ||
| ./irods_python-re_installer.py | ||
| fi | ||
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| touch /etc/irods/.provisioned | ||
| fi | ||
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| find /var/lib/irods -not -path '/var/lib/irods/Vault*' -exec chown -c irods:irods {} \; | ||
| chown -cR irods:irods /etc/irods | ||
| find /var/lib/irods -not -path '/var/lib/irods/Vault*' -exec chown -c $IRODS_SERVICE_ACCOUNT_GROUP:$IRODS_SERVICE_ACCOUNT_USER {} \; |
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Could we move the vault out to a bind mount to /data? I have earlier had problems with irods doing a chown -R on the /var/lib/irods and this then going into the full ceph file system...
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Added a TODO for this.
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| {# XXX #} |
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Note to self, check this for the b64encode workaround: https://pypi.org/project/jinja2-base64-filters/ |
Meh, looks like this isn't compatible with j2cli. Keeping the existing hack for now. It works and can be nicened up later if needed. |
Working on an unattended config setup for iRODS.
TODO
Fix "error encountered in graceful shutdown" error from iRODS at the end of iCAT setup(see Graceful shutdown error in setup_irods.py #2)Find replacement for uglyb64encodehackirods_python-re_installer.pyworks, update as neededIRODS_CATALOG_PROVIDER_HOST