chore: release 0.4.0 (#179)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

CHANGELOG.md

@@ -1 +1,32 @@
 # Changelog
+
+## [0.4.0](https://www.github.com/bihealth/cubi-tk/compare/v0.3.0...v0.4.0) (2023-10-27)
+
+
+### Features
+
+* allow for existing files when using irods download ([#176](https://www.github.com/bihealth/cubi-tk/issues/176)) ([944a54c](https://www.github.com/bihealth/cubi-tk/commit/944a54c7ca5a33655eeffd4906d6aa0525550b0f))
+* Fast irods querying ([#184](https://www.github.com/bihealth/cubi-tk/issues/184)) ([d614fcc](https://www.github.com/bihealth/cubi-tk/commit/d614fcc305cda3e629726a1136f7ebdb5915fb5b))
+* Remove hardcoded snappy-pipeline steps ([#174](https://www.github.com/bihealth/cubi-tk/issues/174)) ([f171217](https://www.github.com/bihealth/cubi-tk/commit/f171217bdd40927ae31e4deae802b227845f2dc9))
+* validate ISA-tabs after cookiecutter run ([#181](https://www.github.com/bihealth/cubi-tk/issues/181)) ([aeff82b](https://www.github.com/bihealth/cubi-tk/commit/aeff82b8d47c075f74fd6954c18d67b9b38f2be0))
+
+
+### Bug Fixes
+
+* actually match files recursively ([#180](https://www.github.com/bihealth/cubi-tk/issues/180)) ([e9c49b6](https://www.github.com/bihealth/cubi-tk/commit/e9c49b66a973a459b6d89b40469d9e1e0d31d97c))
+* add space between value and unit symbol for file size formatting ([#166](https://www.github.com/bihealth/cubi-tk/issues/166)) ([79e85bf](https://www.github.com/bihealth/cubi-tk/commit/79e85bf4ae1686f5c5291254a836ce2a4580277a))
+* adjust to change in ISA-tab template ([#186](https://www.github.com/bihealth/cubi-tk/issues/186)) ([#187](https://www.github.com/bihealth/cubi-tk/issues/187)) ([e4f46d4](https://www.github.com/bihealth/cubi-tk/commit/e4f46d47a5fcc22d3bb33f6c878c7194c25eb27c))
+* allow mehari annotations ([#189](https://www.github.com/bihealth/cubi-tk/issues/189)) ([3939f83](https://www.github.com/bihealth/cubi-tk/commit/3939f83bf510d0dfdcfd698234c27f550342c20e))
+* archive copy hangs ([#161](https://www.github.com/bihealth/cubi-tk/issues/161)) ([ae8bb92](https://www.github.com/bihealth/cubi-tk/commit/ae8bb92f6f4395f9a6ebd315d36870274197790e))
+* broken symlinks ([#173](https://www.github.com/bihealth/cubi-tk/issues/173)) ([f76e480](https://www.github.com/bihealth/cubi-tk/commit/f76e480a9306b657467f76109f2e940ced32cbf0))
+* fix to snappy varfish-upload ([#158](https://www.github.com/bihealth/cubi-tk/issues/158)) ([dfebe77](https://www.github.com/bihealth/cubi-tk/commit/dfebe7724e27522faa12dd18b7be495732efb12c))
+* Fixes for changes introdueced when switching pull functions to query ([#188](https://www.github.com/bihealth/cubi-tk/issues/188)) ([5fcc369](https://www.github.com/bihealth/cubi-tk/commit/5fcc369be323ca802f5da6c1e0b545f2b9af1743))
+* handling of <output_dir> input argument ([#163](https://www.github.com/bihealth/cubi-tk/issues/163)) ([bdf0e21](https://www.github.com/bihealth/cubi-tk/commit/bdf0e21f8c83e199877afcfef86163cd32cd0c9c))
+* Unpin Mamba version in CI workflow ([#193](https://www.github.com/bihealth/cubi-tk/issues/193)) ([e5e5596](https://www.github.com/bihealth/cubi-tk/commit/e5e5596118ea19205cf1eb2afb1b3c9e92a2ef4e))
+* Update ISA-tpl dependencies ([#195](https://www.github.com/bihealth/cubi-tk/issues/195)) ([67e1f18](https://www.github.com/bihealth/cubi-tk/commit/67e1f180445e5fbc1fbafd22578c257811210121))
+* use increment, not sub-total, for tqdm.update ([#182](https://www.github.com/bihealth/cubi-tk/issues/182)) ([88672be](https://www.github.com/bihealth/cubi-tk/commit/88672be4132e241cff499ce590a3712b2fe30bb0))
+
+
+### Documentation
+
+* recommend newer python ([#171](https://www.github.com/bihealth/cubi-tk/issues/171)) ([ce41a34](https://www.github.com/bihealth/cubi-tk/commit/ce41a3463463fc27ccf1c240437bded4b16f46bb))