v.0.2.0

Intro

In this releaase custom VCEP rules from ClinGen were implemented and integrated into AutoACMG algorithm. Some additional minor fixes and features were also included.

What's Changed

• Add vcr.py for end-to-end tests by @gromdimon in #158
• Refactor codebase for better internal data structure by @gromdimon in #159
• Update .gitattributes by removing \ by @gromdimon in #165
• Increase test coverage by @gromdimon in #162
• Fix readme by @gromdimon in #166
• 161 add detailed description on dev quickstart by @gromdimon in #167
• Implement some VCEPs for PM1 criterion by @gromdimon in #169
• Implement pm1 vcep rules by @gromdimon in #171
• Implement BP7 VCEP rules by @gromdimon in #173
• PM4 and BP3 rules for VCEPs by @gromdimon in #177
• Implement PP2 and BP1 VCEP rules by @gromdimon in #182
• Add VCEP specifications by @gromdimon in #184
• Implement pm2, ba1, bs1 rules by @gromdimon in #186
• Implement custom Not applicable VCEP rules for PVS1 by @gromdimon in #187
• Implement full gene deletion method by @gromdimon in #188
• Implement del_disrupt_rf method by @gromdimon in #189
• Implemente undergo_nmd method by @gromdimon in #190
• Implement "In biologically relevant transcript" method for strucvars by @gromdimon in #191
• Implement VCEPs for PS1 and PM5 by @gromdimon in #192
• Implement custom PP3 and BP4 rules by @gromdimon in #196
• Add VCEP Documentation by @gromdimon in #199
• Implement crit4prot function for stucvars by @gromdimon in #201
• Implement lof is frequent in population for strucvars by @gromdimon in #202
• Implement lof removes more than 10% of protein for strucvars by @gromdimon in #203
• Implement duplication - tandem setting to temporary fix the PVS1 criteria for duplication CNVs by @gromdimon in #205
• Add misZ score evaluation for PP2 and BP1 by @gromdimon in #207
• Rename Notmet and Met prediction statuses by @gromdimon in #208
• Optimize tests by @gromdimon in #209
• Fix failing tests in PM2 by @gromdimon in #210
• Update documentation by @gromdimon in #214

Full Changelog: v.0.1.0...v.0.2.0