Merge branch 'master' into i_forge

.gitattributes

@@ -0,0 +1 @@
+altamisa/_version.py export-subst

.github/workflows/ci.yml

@@ -9,10 +9,10 @@ jobs:
     strategy:
       matrix:
         python-version:
-          - 3.6
-          - 3.7
-          - 3.8
-          - 3.9
+          - '3.8'
+          - '3.9'
+          - '3.10'
+          - '3.11'
 
     steps:
       - name: Install Python via conda.
@@ -43,7 +43,6 @@ jobs:
           coverage-reports: coverage.xml
         if: ${{ matrix.python-version == '3.7' }}
       - name: Check style with black
-        run: black --check --line-length 100 .
-        if: ${{ matrix.python-version < '3.9' }}
+        run: make black-check
       - name: Check style with flake8
         run: flake8 .

.readthedocs.yaml

@@ -0,0 +1,22 @@
+# .readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the version of Python and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+
+# We recommend specifying your dependencies to enable reproducible builds:
+# https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
+python:
+  install:
+  - requirements: requirements/develop.txt

CONTRIBUTING.rst

@@ -102,7 +102,7 @@ Before you submit a pull request, check that it meets these guidelines:
 2. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring, and add the
    feature to the list in README.rst.
-3. The pull request should work for Python 2.7, 3.4, 3.5 and 3.6, and for PyPy. Check
+3. The pull request should work for Python 3.8, 3.9, 3.10, and 3.11 as well as for PyPy. Check
    https://travis-ci.org/bihealth/altamisa/pull_requests
    and make sure that the tests pass for all supported Python versions.
 

Makefile

@@ -3,10 +3,10 @@
 default: black flake8
 
 black:
-	black -l 100 .
+	black -l 100 --exclude "versioneer.py|_version.py" .
 
 black-check:
-	black -l 100 --check .
+	black -l 100 --exclude "versioneer.py|_version.py" --check .
 
 flake8:
 	flake8 .

altamisa/__init__.py

@@ -2,3 +2,7 @@
 
 __version__ = get_versions()["version"]
 del get_versions
+
+from . import _version
+
+__version__ = _version.get_versions()["version"]