- Rename highimpact and highlight to stemcell_hotspot and cancer_gene #31
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches_ignore: [] | |
| jobs: | |
| cancel-previous: | |
| runs-on: ubuntu-latest | |
| if: github.ref != 'refs/heads/main' | |
| steps: | |
| - uses: khan/[email protected] | |
| with: | |
| workflows: "main.yml" | |
| env: | |
| GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}' | |
| testing-R: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.12" | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: stemcnv-check-general-R | |
| channels: conda-forge,bioconda | |
| environment-file: stemcnv_check/envs/general-R.yaml | |
| miniforge-version: latest | |
| auto-activate-base: false | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: Rscript -e "testthat::test_local()" | |
| # env: | |
| # DIFF_MAIN: ${{ github.event_name == 'pull_request' }} | |
| # DIFF_LAST_COMMIT: ${{ github.ref == 'refs/heads/main' }} | |
| testing-py: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.12" | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: pip install .[test] | |
| - run: pytest | |