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msgf_plus index database failing when creating big proteogenomics DBs due memory
bug
Something isn't working
#421
opened Sep 20, 2024 by
ypriverol
image of the quantms workflow still refers to nf-core and version 1.2
enhancement
New feature or request
#417
opened Sep 9, 2024 by
ypriverol
OpenMS and frequently mass shifts in Unimod
enhancement
New feature or request
#411
opened Aug 20, 2024 by
ypriverol
Benchmarking of the id dda workflow (ms2rescore, percolator, SNR)
enhancement
New feature or request
#410
opened Aug 16, 2024 by
ypriverol
First Tasks for of improvements of OpenMS and quantms
enhancement
New feature or request
research-projects
#393
opened Jul 31, 2024 by
ypriverol
1 of 3 tasks
Comet new version has been released Comet v2024.01.0
enhancement
New feature or request
#371
opened May 7, 2024 by
ypriverol
3 tasks
the charge min and max and missclevages are sometimes not working
bug
Something isn't working
#364
opened Mar 25, 2024 by
ypriverol
Defining more enzymes in OpenMS Comet adaptor
enhancement
New feature or request
#354
opened Feb 22, 2024 by
ypriverol
Open-search with quantms, use cases and workflow
documentation
Improvements or additions to documentation
enhancement
New feature or request
high-priority
open-search
sage-support
#345
opened Jan 18, 2024 by
ypriverol
8 tasks
Test the impact and how the parameter num_hits works
documentation
Improvements or additions to documentation
enhancement
New feature or request
high-priority
#344
opened Jan 16, 2024 by
ypriverol
Big datasets more than 200 GB mztab size are not supported.
bug
Something isn't working
high-priority
#342
opened Jan 16, 2024 by
ypriverol
We should dynamically configure some of the steps depending of the experiment size.
bug
Something isn't working
enhancement
New feature or request
high-priority
#340
opened Jan 12, 2024 by
ypriverol
3 tasks
Support for Phosphoproteomics datasets.
documentation
Improvements or additions to documentation
enhancement
New feature or request
high-priority
#334
opened Jan 9, 2024 by
ypriverol
10 tasks
DIA-NN - automated handling of challenging data
enhancement
New feature or request
#330
opened Dec 18, 2023 by
michaelsteidel86
LFQ MBR FDR algorithm needed.
enhancement
New feature or request
help wanted
Extra attention is needed
high-priority
#303
opened Oct 13, 2023 by
ypriverol
3 tasks
More parameters for MSstats
enhancement
New feature or request
help wanted
Extra attention is needed
high-priority
#283
opened Sep 15, 2023 by
ypriverol
2 tasks
Add Multiple or Custom Enzymes
enhancement
New feature or request
question
Further information is requested
#273
opened May 23, 2023 by
jackrogan
proteomicsLFQ fails with empty peptides
bug
Something isn't working
#266
opened Apr 8, 2023 by
ypriverol
mzTab to verbose with repeated data.
enhancement
New feature or request
#261
opened Jan 11, 2023 by
ypriverol
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