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bids-apps · Dec 18, 2023 · 85bbf9e · 85bbf9e
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commit 85bbf9e
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Showing 4 changed files with 1 addition and 5 deletions.
diff --git a/giga_connectome/mask.py b/giga_connectome/mask.py
@@ -188,7 +188,7 @@ def _get_consistent_masks(
         Functional masks with the same affine.
 
     List of str
-        Identidiers of scans with a different affine.
+        Identifiers of scans with a different affine.
     """
     weird_mask_identifiers = []
     odd_masks = np.array(mask_imgs)[np.array(exclude)]

diff --git a/giga_connectome/postprocess.py b/giga_connectome/postprocess.py
@@ -104,7 +104,6 @@ def run_postprocessing_dataset(
     gc_log.info("Processing subject")
 
     for img in tqdm(images):
-
         print()
         gc_log.info(f"Processing image:\n{img.filename}")
 
@@ -153,7 +152,6 @@ def run_postprocessing_dataset(
         gc_log.info(f"Saved to:\n{output_path}")
 
     if analysis_level == "group":
-
         gc_log.info("Create group connectome")
 
         for desc in connectomes:

diff --git a/giga_connectome/tests/test_cli.py b/giga_connectome/tests/test_cli.py
@@ -31,7 +31,6 @@ def test_help(capsys):
 
 @pytest.mark.smoke
 def test_smoke(tmp_path, capsys):
-
     bids_dir = resource_filename(
         "giga_connectome",
         "data/test_data/ds000017-fmriprep22.0.1-downsampled-nosurface",

diff --git a/giga_connectome/workflow.py b/giga_connectome/workflow.py
@@ -32,7 +32,6 @@ def set_verbosity(verbosity: int | list[int]) -> None:
 
 
 def workflow(args):
-
     gc_log.info(vars(args))
 
     # set file paths
Original file line number	Diff line number	Diff line change
Expand Up		@@ -32,7 +32,6 @@ def set_verbosity(verbosity: int \| list[int]) -> None:


		def workflow(args):

		gc_log.info(vars(args))

		# set file paths
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