[MAINT] pin dependencies for docker build (#59)

* pin dependencies

* pin versions

* pin base iamge

* add docker linting config

.hadolint.yaml

@@ -0,0 +1,3 @@
+---
+ignored:
+-   DL3008

.pre-commit-config.yaml

@@ -21,4 +21,15 @@ repos:
 -   repo: https://github.com/PyCQA/flake8
     rev: 6.0.0
     hooks:
-      - id: flake8
+    -   id: flake8
+-   repo: https://github.com/hadolint/hadolint
+    rev: v2.12.1-beta
+    hooks:
+    -   id: hadolint-docker
+        name: Lint Dockerfiles
+        description: Runs hadolint Docker image to lint Dockerfiles
+        language: docker_image
+        types: [dockerfile]
+        entry: ghcr.io/hadolint/hadolint hadolint
+ci:
+    skip: [hadolint-docker]

Dockerfile

@@ -1,4 +1,5 @@
-FROM python:3.9
+#  https://hub.docker.com/layers/library/python/3.9-slim-bullseye/images/sha256-de58dcff6a8ccd752899e667aded074ad3e8f5fd552969ec11276adcb18930a4
+FROM python@sha256:de58dcff6a8ccd752899e667aded074ad3e8f5fd552969ec11276adcb18930a4
 
 ARG DEBIAN_FRONTEND="noninteractive"
 
@@ -9,16 +10,14 @@ RUN apt-get update -qq && \
 
 ARG TEMPLATEFLOW_HOME="/templateflow"
 
-RUN pip3 install nilearn==0.9.2 templateflow pybids h5py tqdm&& \
-    mkdir -p /code && mkdir -p /templateflow
-
 WORKDIR /code
 
-RUN python3 -c "from templateflow.api import get; get(['MNI152NLin2009cAsym', 'MNI152NLin6Asym'])"
-
 COPY [".", "/code"]
 
-RUN pip install --upgrade pip && pip3 install -e .
+RUN pip3 install --no-cache-dir pip==23.0.1 && \
+    pip3 install --no-cache-dir --requirement requirements.txt && \
+    python3 -c "from templateflow.api import get; get(['MNI152NLin2009cAsym', 'MNI152NLin6Asym'])" && \
+    pip3 --no-cache-dir install --editable .
 
 ENV TEMPLATEFLOW_HOME=${TEMPLATEFLOW_HOME}
 

requirements.txt

@@ -0,0 +1,33 @@
+astor==0.8.1
+bids-validator==1.14.0
+certifi==2023.11.17
+charset-normalizer==3.3.2
+click==8.1.7
+docopt==0.6.2
+formulaic==0.5.2
+h5py==3.10.0
+idna==3.6
+interface-meta==1.3.0
+joblib==1.3.2
+lxml==4.9.3
+nibabel==5.2.0
+nilearn==0.9.2
+num2words==0.5.13
+numpy==1.26.2
+packaging==23.2
+pandas==2.1.4
+pybids==0.15.6
+python-dateutil==2.8.2
+pytz==2023.3.post1
+requests==2.31.0
+scikit-learn==1.3.2
+scipy==1.11.4
+six==1.16.0
+SQLAlchemy==1.3.24
+templateflow==0.8.1
+threadpoolctl==3.2.0
+tqdm==4.66.1
+typing_extensions==4.9.0
+tzdata==2023.3
+urllib3==2.1.0
+wrapt==1.16.0