[ENH] set up CI

[Remi-Gau]

Summary by Sourcery

This pull request sets up continuous integration (CI) for the project by adding pre-commit hooks, CI workflows for building Docker and Apptainer images, and Dependabot configuration for automatic dependency updates. Additionally, the README.md file has been updated to provide a clearer project description.

• Enhancements:
  • Updated README.md to provide a more concise description of the project, focusing on Docker and Apptainer images for CAT12.
• Fix dockerfile
  • update dockerfile and main script to make sure that the image can be built and run. Base dockerfile was generated with neurodocker and adapted from there.
  • required switching to an ubuntu based image rather than a debian one
• CI:
  • Added .pre-commit-config.yaml to configure pre-commit hooks for YAML, JSON, and Dockerfile linting, as well as code spell checking.
  • Added .github/workflows/apptainer.yml to set up a CI workflow for building Apptainer images on push and pull request events.
  • Added .github/workflows/docker.yml to set up a CI workflow for building ans testing Docker images on push and pull request events.
  • Added .github/dependabot.yml to configure Dependabot for automatic dependency updates for GitHub Actions and git submodules on a monthly schedule.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request sets up continuous integration (CI) for the project by adding pre-commit hooks, GitHub Actions workflows for building Docker and Apptainer images, and Dependabot configuration for automated dependency updates. The README.md file has also been updated to reflect the new project name and description.

File-Level Changes

Files	Changes
.github/workflows/apptainer.yml .github/workflows/docker.yml	Added GitHub Actions workflows for building Apptainer and Docker images on push and pull request events targeting the master branch.
.pre-commit-config.yaml .github/dependabot.yml	Added pre-commit hooks configuration and Dependabot configuration for automated dependency updates.

---

Tips

• Trigger a new Sourcery review by commenting @sourcery-ai review on the pull request.
• Continue your discussion with Sourcery by replying directly to review comments.
• You can change your review settings at any time by accessing your dashboard:
  • Enable or disable the Sourcery-generated pull request summary or reviewer's guide;
  • Change the review language;
• You can always contact us if you have any questions or feedback.

[sourcery-ai]

Hey @Remi-Gau - I've reviewed your changes - here's some feedback:

Overall Comments:

• Consider preserving some of the original structural information in the README, adapting it to the new CAT12 container context if necessary.

Here's what I looked at during the review

• 🟡 General issues: 2 issues found
• 🟡 Security: 1 issue found
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟡 Documentation: 1 issue found

---

Sourcery is free for open source - if you like our reviews please consider sharing them ✨

• X
• Mastodon
• LinkedIn
• Facebook

_{Help me be more useful! Please click 👍 or 👎 on each comment to tell me if it was helpful.}