fix CLI

bids-apps · Sep 29, 2024 · fad2fdb · fad2fdb
1 parent a9f99dd
commit fad2fdb
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Showing 2 changed files with 12 additions and 3 deletions.
diff --git a/src/cat12/defaults.py b/src/cat12/defaults.py
@@ -5,7 +5,13 @@
 import os
 
 MCR_VERSION = os.getenv("MCR_VERSION")
-CAT_VERSION = " ".join(os.getenv("CAT_VERSION")[1:10].split("_"))
+if MCR_VERSION is None:
+    MCR_VERSION = "2017b"
+
+tmp = os.getenv("CAT_VERSION")
+if tmp is None:
+    tmp = f".8.1_r2042_R${MCR_VERSION}"
+CAT_VERSION = " ".join(tmp[1:10].split("_"))
 
 
 def log_levels() -> list[str]:

diff --git a/src/cat12/main.py b/src/cat12/main.py
@@ -21,7 +21,7 @@
     list_subjects,
 )
 from cat12.cat_logging import cat12_log
-from cat12.defaults import log_levels
+from cat12.defaults import CAT_VERSION, log_levels
 from cat12.methods import generate_method_section
 from cat12.utils import progress_bar
 
@@ -34,7 +34,10 @@
     EXIT_CODES = json.load(f)
 
 # Get environment variable
-STANDALONE = Path(os.getenv("STANDALONE"))
+STANDALONE = os.getenv("STANDALONE")
+if STANDALONE is None:
+    STANDALONE = f"/opt/CAT12${CAT_VERSION}/standalone"
+STANDALONE = Path(STANDALONE)
 
 logger = cat12_log(name="cat12")