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feat: add io/loaders module #83

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jjjermiah merged 19 commits intomainbhklab/readii:mainfrom katys/add-iobhklab/readii:katys/add-ioCopy head branch name to clipboardDec 13, 2024

+409-45

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Commits on Dec 11, 2024

• feat: add io/loaders module with features, general, and images specific loading functions

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Commits on Dec 12, 2024

• test: test the loadImageDatasetConfig function

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• feat: add READII config files for the two test datasets

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• tests: add radiomic feature extraction output test for 4D lung so output can be used for other tests

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• feat: test radiomic feature output for 4D Lung

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• test: add ct to seg match file for 4D Lung so tests work

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• refactor: improve import in test_general

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• chore: ignore test outputs in new data structure

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• chore: remove output feature file for 4D-lung

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• Merge remote-tracking branch 'origin/main' into katys/add-io

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Commits on Dec 13, 2024

• Refactor file loading with custom error handling and pathlib support (#87)

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• refactor: apply suggest updates for error handling, add logger

  strixy16

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• refactor: made expected image types a fixture

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• build: readii updated to 1.20.0

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• fix: update output paths for ct_to_seg files for new data arrangement

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• feat: update test output ignore to have procdata along with results for any dataset

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• Merge branch 'main' into katys/add-io

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• chore: update lockfile

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• feat: update test fixtures to copy metadata files to new paths, and remove them after tests for cleanliness

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