fix(image_processing): fixed usage of ctDirPath variable in padSegToM…

…atchCT
bhklab · Dec 20, 2023 · 892c8d7 · 892c8d7
1 parent b7b452e
commit 892c8d7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/yarea/image_processing.py b/src/yarea/image_processing.py
@@ -88,7 +88,7 @@ def padSegToMatchCT(ctDirPath:str,
 
     # Load the CT image to align the segmentation to if not passed as argument
     if ctImage == None:
-        ctImage = loadDicomSITK(ctFolderPath)
+        ctImage = loadDicomSITK(ctDirPath)
 
     # Load in the segmentation image if not passed as argument
     if alignedSegImage == None:
@@ -102,7 +102,7 @@ def padSegToMatchCT(ctDirPath:str,
             alignedSegImage = alignImages(ctImage, segImage)
 
     # Load in header information for the CT and SEG files
-    ctSeries = Series(ctFolderPath)
+    ctSeries = Series(ctDirPath)
     segWithHeader = pydicom.dcmread(segFilePath, stop_before_pixels=True)
 
     # Get the first and last reference ID for the slices of the CT that are in the SEG file